FastQCFastQC Report
Tue 22 Aug 2023
SRR6215567_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6215567_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34155864
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCG1410870.4130681630539342No Hit
GTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTG1399050.409607556699488No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA1347370.39447691910238314No Hit
CCCATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGC1227040.35924724375293215No Hit
CTCCTACTCGTCGCGGCGTAGCGTCCGCGGGGCCCGACGCCGCGGGGGCG1100770.3222784819613991No Hit
GTCCTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTG751580.22004420675758632No Hit
CTCCTCCATGTGCTCACGCACCTCCTCTAGGCGGTCACGGGCCTGGTTGC601870.17621278735622087No Hit
CTCGGAGAATCTTTATTAAGCAAGGGCCACCAGAGGGCCAGAGAGGTGCT588320.17224567939490568No Hit
GTGGTTGTGATGTGTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGT578270.1693032856671405No Hit
GGGGAGTGGAAGCGGGCACCTCACTGGGCAGTCAGAGTCTCGCTGGCCTT570820.16712210822715537No Hit
CATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGCCA557080.16309937292173315No Hit
CCATGGATAAAGTACAAGCTGGAACCATTGGAAGAACATGTGTTGGGGCC552210.16167355625962207No Hit
CTCCCCGCCCCCAGCTTCAGTGGTGGCTATGTCCTGTCTGCCAAAACCTT516820.1513122314809545No Hit
CCTCCATCTTGGAGCGCACCTCCTCCATGTGCTCACGCACCTCCTCTAGG484120.14173847278464394No Hit
GTGGGTTTTGGCCCTGGTGTGGTACTCGTTCAAGGTAGGGTTGCTCTTGA463040.13556676534371961No Hit
CTCCTAAGTATTTTTCAGGTGTGGTACCCTCTGGAAGTTTAACGAAACAT450190.1318046002291144No Hit
CCGGTATTTAGCCTTAGATGGAGTTTACCACCCGCTTTGGGCTGCATTCC440530.1289763889445162No Hit
GGGGACATATGTTTCATCAACTGTCAGAGCAGAGAAGCATGGCCGCCTTT427200.12507369159216702No Hit
GCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCC423500.12399042225955696No Hit
CTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTT413190.12097190690301379No Hit
CCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGAC400530.11726536913251558No Hit
GTCCTCCATCAGTGCCGTCAGTTCTTGTGTGACTTGGGAGCTCTGCAGCT396970.11622308836924751No Hit
CCCAGCTTCAGTGGTGGCTATGTCCTGTCTGCCAAAACCTTACTTCCCCG396780.11616746102514051No Hit
CCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCGC393700.11526571249961645No Hit
CTCCGCTCCTAAGTATTTTTCAGGTGTGGTACCCTCTGGAAGTTTAACGA391300.11456305131089643No Hit
CTTCGGTGTTATCCAGGACAGTCTGGTGTTTCACAAAGGCTACATCTCCT381440.11167628492723826No Hit
CTCCATCTTGGAGCGCACCTCCTCCATGTGCTCACGCACCTCCTCTAGGC357670.10471701140395687No Hit
GCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGA355270.10401435021523683No Hit
CCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC350420.10259438906303177No Hit
CCCACCAGTGCCAGTGTTGCTGCTGGCTTTATGCCTTTCATCAAATTTGA343550.10058302141032063No Hit
CTCGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTC342880.10038686182846962No Hit
CCCCTGCCTTGTACACAGCTAGGCGCTTCTGCAGATCATCGGCATCCCGC342820.10036929529875162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)