FastQCFastQC Report
Thu 13 Jul 2023
SRR6337303.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6337303.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87897550
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length25-50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGACTGCATAATTTGTGGTAGTGGGGG75927648.6381975379291No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG27953923.180284319642584No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA23496392.6731564190355703No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGGA19635142.2338665867251137No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGG10583591.2040824801146335No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGCG10280491.1695991526498748No Hit
CGACTGCATAATTTGTGGTAGTGGGGG7816650.8892909984407985No Hit
CTCGACTGCATAATTTGTGGTAGTGGGG7226900.8221958404983983No Hit
GACTGCATAATTTGTGGTAGTGGGGG7085470.8061055171617413No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACC5858830.6665521393941014No Hit
CTCGACTGCATAATTTGTGGTAGTTGGGG5394620.6137395183369729No Hit
CGACTGCATAATTTGTGGTAGTGGGGGA5279610.6006549670610842No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGC4756350.5411242975486803No Hit
GACTGCATAATTTGTGGTAGTGGGGGA4588030.5219747308087654No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA4235990.4819235575963153No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGG3931450.4472764030396752No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGG3887940.4423263219509531No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC3068900.3491451126908543No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG2939460.3344188774317373No Hit
GGGAGGGCGCGCGGGTCGGGGCGGCGGCGGCGG2906700.3306918110914354No Hit
TCGACTGCATAATTTGTGGTAGTGGGG2870830.3266109237401953No Hit
CGGGAGACCGGGGTTCGATTCCCCGACGGG2856500.3249806166383477No Hit
GGGAGACCGGGGTTCGATTCCCCGACGGG2843450.3234959336181725No Hit
GCGGGAGACCGGGGTTCGATTCCCCGACGGG2681340.3050528712119962No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGG2645300.30095264316240894No Hit
TCGACTGCATAATTTGTGGTAGTTGGGG2321730.26414046807903063No Hit
GGGCGGCGGCGGTCGGCGGGCGGCGGGGCGG2306040.2623554353904062No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGGA2235980.25438479229512084No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCG2064400.23486433922219677No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTC1943690.22113130570761072No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGGGC1920650.21851007223750832No Hit
GGGCGGCGGCGGTCGGCGGGCGGCGGGGCG1900220.21618577537144096No Hit
GGGAGACCGGGGTTCGATTCCCCGACGGGG1874830.21329718518889323No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGAC1863960.21206051818281627No Hit
CGGGAGACCGGGGTTCGATTCCCCGACGGGGA1828400.20801489916385613No Hit
CGGGAGACCGGGGTTCGATTCCCCGACGGGG1700100.19341836035247853No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1673320.19037163151873973No Hit
GCTGGTCCGATGGTAGTGGGTTATCAGAA1654570.18823846625986732No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACC1637340.18627822959798082No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAA1533760.17449405586390065No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAA1508810.17165552395942776No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGG1506980.1714473270301618No Hit
GCTGGTCCGAAGGTAGTGAGTTATCTCAA1482970.1687157378106671No Hit
AAAAAAAAAAAAAAAAAAAAAAAAA1455000.16553362408849848No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAA1426690.16231282896963567No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT1399420.15921035341713163No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGAC1359560.15467552849880345No Hit
AGTTGGTCCGAGTGTTGTGGGTTATTGTTA1313130.14939324247376634No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT1290850.14685847330215687No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGGAC1268300.14429298655081968No Hit
TGACTGCATAATTTGTGGTAGTGGGGG1195310.13598900083108117No Hit
CTGGTGTAGTGGTATCATGCAAGATT1191980.13561015068110543No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA1187460.13509591564269996No Hit
ATCGTATAGTGGTTAGTACTCTGCG1167950.13287628608533456No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGA1153540.1312368774783825No Hit
GGGAGACCGGGGTTCGATTCCCCGACGGGGA1125820.12808320595966555No Hit
GCGGGAGACCGGGGTTCGATTCCCCGACGGGG1093450.12440050945674822No Hit
CTAGATAACCTCGGGCCGATCGCAC1023760.11647196082257127No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA991830.11283932259772884No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGG954320.10857185439184595No Hit
GGCTGGTCCGAAGGTAGTGAGTTATCTCAA953990.10853431068328981No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAA950990.10819300424187023No Hit
CTCGACTGCATAATTTGTTGTAGTGGGGG933600.1062145645697747No Hit
GCGGGAGACCGGGGTTCGATTCCCCGACGGGGA900260.10242151231746506No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT896310.10197212550292928No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA889400.10118598299952615No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC884860.10066947258484452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)