FastQCFastQC Report
Tue 4 Jul 2023
SRR6337304.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6337304.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79605399
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length25-50
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGACTGCATAATTTGTGGTAGTGGGGG895292711.246632907398656No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG36437504.577264916416033No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA22544672.8320528862621495No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGGA13983191.7565630190484947No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGG10542931.3243988639514264No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGCG9233641.1599263512265041No Hit
CTCGACTGCATAATTTGTGGTAGTGGGG8939871.1230230753569868No Hit
CGACTGCATAATTTGTGGTAGTGGGGG8508371.068818209176993No Hit
GGGGGGGATGCGTGCATTTATCAGA7702890.9676341173794003No Hit
CTCGACTGCATAATTTGTGGTAGTTGGGG7134750.8962645862751093No Hit
GACTGCATAATTTGTGGTAGTGGGGG7071080.888266385047577No Hit
CGACTGCATAATTTGTGGTAGTGGGGGA5848460.7346813248181822No Hit
GACTGCATAATTTGTGGTAGTGGGGGA4764310.598490813418321No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACC4566620.573657070671802No Hit
TCGACTGCATAATTTGTGGTAGTGGGG4286300.53844337869596No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA3888420.48846184415205307No Hit
GGGCGGCGGCGGTCGGCGGGCGGCGGGGCGG3775690.474300744350267No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGG3595320.45164273342816863No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGC3463540.43508857985876065No Hit
GCGGGAGACCGGGGTTCGATTCCCCGACGGG3283880.412519758867109No Hit
CGGGAGACCGGGGTTCGATTCCCCGACGGGG3256370.4090639631113463No Hit
TCGACTGCATAATTTGTGGTAGTTGGGG3139420.3943727485116933No Hit
GGGGGGGGATGCGTGCATTTATCAGA3005620.3775648433091831No Hit
ATCGTATAGTGGTTAGTACTCTGCG2929330.36798132247286397No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGC2716250.3412142937691952No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCG2675120.33604755878429804No Hit
GGGCGGCGGCGGTCGGCGGGCGGCGGGGCG2400690.30157376637230343No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACC2318070.29119507333918393No Hit
GGGAGACCGGGGTTCGATTCCCCGACGGGG2187760.27482558061168694No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGAC2060710.25886560784652307No Hit
CGGGGGGGATGCGTGCATTTATCAGA2012960.2528672709749247No Hit
CGGGAGACCGGGGTTCGATTCCCCGACGGGGA2007870.25222786710735534No Hit
GGGGGGGATGCGTGCATTTATCAGAT1980030.24873061687687792No Hit
GCGGGAGACCGGGGTTCGATTCCCCGACGGGG1924890.2418039510109107No Hit
CGGGAGACCGGGGTTCGATTCCCCGACGGG1881990.23641486929799824No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGG1772800.22269846295224272No Hit
ACTGCATAATTTGTGGTAGTGGGGG1728930.2171875302075931No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG1718500.2158773175673675No Hit
GGGAGACCGGGGTTCGATTCCCCGACGGGGA1532540.19251709296752598No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC1516160.19045944358623215No Hit
TGACTGCATAATTTGTGGTAGTGGGGG1503530.18887286778124182No Hit
CTAGATAACCTCGGGCCGATCGCAC1391850.17484366858082076No Hit
GTGCATTTATCAGATCAAAACCAACCCGG1368070.1718564340089546No Hit
AGTTGGTCCGAGTGTTGTGGGTTATTGTTA1345840.1690639098486272No Hit
CCCCGCCACGCAGTTTTATCCGGTAAAGC1277430.16047027162064723No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGAC1272860.15989618995565866No Hit
GCTGGTCCGATGGTAGTGGGTTATCAGAA1264450.15883972894853526No Hit
GCTGGTCCGAAGGTAGTGAGTTATCTCAA1249010.15690016201036816No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGG1198090.15050361094226788No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT1148400.14426157200719514No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT1136870.1428131777845872No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGA1112960.13980961266207584No Hit
GGGAGACCGGGGTTCGATTCCCCGACGGG1095830.1376577485655213No Hit
ACTGCATAATTTGTGGTAGTGGGGGA1094330.13746931913499988No Hit
CTGGTGTAGTGGTATCATGCAAGATT1066300.13394820117665637No Hit
GGGAGGGCGCGCGGGTCGGGGCGGCGGCGGCGG1012250.12715846069686806No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGC994740.12495886114458142No Hit
GTGGTCTAGTGGTTAGGATTCGGCG966330.12139000773050582No Hit
CTAGCTCAGTCGGTAGAGCATGAGAC919110.11545824925769169No Hit
AGGGCTTCTGTCGTGAGTGGCACACGTAGGG899720.11302248481915153No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA896110.11256899798969666No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC895590.11250367578711588No Hit
CGTGATCGTATAGTGGTTAGTACTCTGC885810.11127511590011627No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC879480.1104799437033159No Hit
TGACTGCATAATTTGTGGTAGTGGGGGA876730.11013448974735998No Hit
AATGGATTTTTGGAGCAGGGAGATGGA845890.1062603806558397No Hit
GGCGGCGGCGGTCGGCGGGCGGCGGGGCGG838320.10530944012980828No Hit
ATGCGTGCATTTATCAGATCAAAACCAAC823720.10347539367273317No Hit
CTAGCTCAGTCGGTAGAGCATGAGA806830.10135367828506205No Hit
CGGGCGGCGGCGGTCGGCGGGCGGCGGGGCGGG805070.10113258775325026No Hit
ACTCGACTGCATAATTTGTGGTAGTGGGGG799030.10037384524635069No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)