FastQCFastQC Report
Wed 5 Jul 2023
SRR6398761_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6398761_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences198024433
Total Bases9.9 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATC76489703.862639515801568No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGAT55569752.8062067472249748No Hit
TCCAACGGGGCCTTTCCTTCTGGCCTGTAGGCACCATCAATAGATCGGAA34675251.7510591735919778No Hit
ATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATCG33625271.6980364236164736No Hit
TGATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGAT29692821.4994523428328665No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCG27643951.3959868275446596No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAGA24306191.2274338894332297No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAA23141081.168597210426049No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCG21116271.066346696723025No Hit
TCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAA18694330.9440415870298187No Hit
TCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGA17874540.9026431602003375No Hit
ATGTATTTATTAGATAAAAAATCACTGTAGGCACCATCAATAGATCGGAA15986580.8073034098777094No Hit
TGATGTATTTATTAGATAAAAAATCACTGTAGGCACCATCAATAGATCGG15795720.7976652052830269No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATC12644650.638539891691042No Hit
TCCAACGGGGCCTTTCCTTCTGGCTCTGTAGGCACCATCAATAGATCGGA11533570.582431663874528No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAAT10620290.5363121024565691No Hit
CCAACGGGGCCTTTCCTTCTGGCCTGTAGGCACCATCAATAGATCGGAAG10336840.5219982122105105No Hit
TTCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGA10228670.5165357549590863No Hit
TTTTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGA9819910.4958938577039127No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAGAT9305790.46993140487871005No Hit
ACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGGAAG9143120.4617167619916882No Hit
ACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAAGA9109760.46003212138978833No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTGTAGGCACCATCAATAGATC8886400.44875270517754745No Hit
AAGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCG8707120.43969927690690574No Hit
TTCCAACGGGGCCTTTCCTTCTGGCCTGTAGGCACCATCAATAGATCGGA8616800.43513822357466364No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCTGTAGGCACCATCAATAGATCGG8046380.40633268723965993No Hit
TCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGG7929190.40041473064083966No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGG7801780.39398067611182097No Hit
TCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGGA7569020.3822265710009633No Hit
TTTTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGAT7294600.36836868509049087No Hit
TGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATCGG6981690.3525670996366393No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCCTGTAGGCACCATCAATAGAT6558420.3311924645177497No Hit
GATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATC6508040.3286483340164393No Hit
TTGATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGA5449620.27519937400855987No Hit
TTGCGTGCCTTGTTGTAGACGGCCTTGGCTGTAGGCACCATCAATAGATC5281610.26671506742806833No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCA5248510.26504355651910894No Hit
TCCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGGAA5243650.2647981322587602No Hit
ATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATCGGAAG5082740.25667236729318144No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATA4806080.24270136402814493No Hit
GATGTATTTATTAGATAAAAAATCACTGTAGGCACCATCAATAGATCGGA4542220.22937674564633143No Hit
AAGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGG4413820.222892697286501No Hit
CTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAA4334250.21887450625852822No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAATCTGTAGGCACCATCAA4300210.21715552645970712No Hit
TTCCAACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAG4156270.20988672645258882No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAA3991460.20156401609290306No Hit
CTTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATC3955740.19976019827815894No Hit
TTCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGG3951440.19954305335645123No Hit
TTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATCGGAAGA3874980.195681913655574No Hit
TTTGCTCGAATATATTAGCATGGAATCTGTAGGCACCATCAATAGATCGG3829900.19340542689497311No Hit
TATCTGGTTGATCCTGCCAGTAGTCCTGTAGGCACCATCAATAGATCGGA3581010.18083677583361643No Hit
CCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAA3577110.18063983043950946No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAAT3494240.17645499330883074No Hit
TTGCCTTGTTGTAGACGGCCTTGGCTGTAGGCACCATCAATAGATCGGAA3398510.17162074136578895No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATGGCCCTGTAGGCACCA3304530.16687486235600027No Hit
TCCAACGGGGCCTTTCCTTCTGGCTGTAGGCACCATCAATAGATCGGAAG3239960.1636141536130544No Hit
TCTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCA3164090.15978280821538826No Hit
TTGATGTATTTATTAGATAAAAAATCACTGTAGGCACCATCAATAGATCG3138700.15850064320093268No Hit
AACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAGATCG3132780.15820169019244207No Hit
AGAGATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAG3109130.15700739312304962No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTGTAGGCACCATCAATAGATCG3017370.15237362149144495No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAAT2970470.15000522688026077No Hit
ATGTATTTATTAGATAAAAAATCCTGTAGGCACCATCAATAGATCGGAAG2876840.14527702245712273No Hit
CTTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGAT2840820.1434580549966781No Hit
TCGTTGGGCCCCCGGTTCGATTCCGGGCTTGCGCCTGTAGGCACCATCAA2839480.1433903865792157No Hit
TGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATAG2796730.141231562066889No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATGGCCCTGTAGGCACCAT2769710.1398670839774605No Hit
TTTTTCCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATC2762930.13952470198462832No Hit
TGATGTATTTATTAGATAAAAAATCCTGTAGGCACCATCAATAGATCGGA2741550.13844503723436996No Hit
GCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAA2723300.13752343378758722No Hit
GTCTAGTCGGTTATGGCATCTGCCTGTAGGCACCATCAATAGATCGGAAG2718440.13727800952723848No Hit
ATGTATTTATTAGATAAAAAATCAATCTGTAGGCACCATCAATAGATCGG2631630.13289420704969268No Hit
TTGTGGCGTCGCTGAACCATAGCCTGTAGGCACCATCAATAGATCGGAAG2618780.13224529722551964No Hit
TTTGTGGCGTCGCTGAACCATAGCCTGTAGGCACCATCAATAGATCGGAA2587210.130651049509633No Hit
CCAACGGGGCCTTTCCTTCTGGCTCTGTAGGCACCATCAATAGATCGGAA2560320.12929313626667474No Hit
TTGCCAGATCGGGGTTCAATTCCCCGTCGCGGACTGTAGGCACCATCAAT2539150.12822407626840673No Hit
TCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGGAAG2483620.12541987684923708No Hit
TGATGTATTTATTAGATAAAAAATCAATCTGTAGGCACCATCAATAGATC2395180.12095376129671837No Hit
TTGTGGCGTCGCTGAACCATAGCAGGCTAGCCTGTAGGCACCATCAATAG2338220.11807734856637615No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCCTGTAGGCACCATCAATAGATC2326880.1175046919588958No Hit
CCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGA2281630.11521962039906458No Hit
TTTCCACGTTCTAGCATTCAAGGTCCTGTAGGCACCATCAATAGATCGGA2254760.11386271713248637No Hit
TAGAGATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATA2253760.11381221831348456No Hit
ACGCGAAACTCAGGTGCTGCAATCTCTGTAGGCACCATCAATAGATCGGA2235270.1128784951501414No Hit
CGTTGGGCCCCCGGTTCGATTCCGGGCTTGCGCCTGTAGGCACCATCAAT2205430.11137161039112785No Hit
AGATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGAT2116130.10686206585426758No Hit
TATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATC2092860.10568695833609583No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATGGCCCTGTAGGCACCATC2090030.10554404667832075No Hit
TTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGG2085210.1053006423707321No Hit
TCGGGGCTGATCCGGGTTGAAGACATTGTCCTGTAGGCACCATCAATAGA2058810.10396747354908473No Hit
TGTATTTATTAGATAAAAAATCACTGTAGGCACCATCAATAGATCGGAAG2024100.10221465954153243No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)