FastQCFastQC Report
Wed 5 Jul 2023
SRR6398762_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6398762_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122293088
Total Bases6.1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATC22859981.869278172123677No Hit
TCCAACGGGGCCTTTCCTTCTGGCCTGTAGGCACCATCAATAGATCGGAA21786851.7815275054629418No Hit
TCCAACGGGGCCTTTCCTTCTGGCTCTGTAGGCACCATCAATAGATCGGA14899981.2183828410645743No Hit
ACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAAGA12604771.030701751516815No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAGA10262170.8391455451676877No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGAT9964040.8147672254379577No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAA9664610.7902826037069242No Hit
ATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATCG9181850.7508069466689729No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCG8379970.6852366014340893No Hit
CCAACGGGGCCTTTCCTTCTGGCCTGTAGGCACCATCAATAGATCGGAAG8316310.680031074201021No Hit
TCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGA7475950.6113141897275503No Hit
TCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAA7430690.6076132446667796No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATGGCCCTGTAGGCACCA7266360.5941758539942993No Hit
AAGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCG7198870.5886571447112366No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCG6995510.5720282408765408No Hit
TGATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGAT6265690.5123502973446872No Hit
CCAACGGGGCCTTTCCTTCTGGCTCTGTAGGCACCATCAATAGATCGGAA5909040.48318675214088963No Hit
ACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGGAAG5488270.44878006514971636No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAGAT5466570.44700563943564825No Hit
TTTGCTCGAATATATTAGCATGGAATCTGTAGGCACCATCAATAGATCGG5282160.4319262916968782No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATGGCCCTGTAGGCACCAT4895490.40030798797066924No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCA4615970.3774514222749858No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAAT4601600.3762763763067296No Hit
ATGTATTTATTAGATAAAAAATCACTGTAGGCACCATCAATAGATCGGAA4579930.3745044037157685No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCCTGTAGGCACCATCAATAGAT4185040.3422139442582397No Hit
AACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAGATCG4059450.3319443532246074No Hit
AACTTTTCGAATCGCATGGCCCTGTAGGCACCATCAATAGATCGGAAGAG3840440.3140357368357564No Hit
TTCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGA3799550.3106921300409063No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAA3785660.30955633404236227No Hit
TGATGTATTTATTAGATAAAAAATCACTGTAGGCACCATCAATAGATCGG3650140.2984747592603108No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTGTAGGCACCATCAATAGATC3613080.29544433451545515No Hit
TTCCAACGGGGCCTTTCCTTCTGGCCTGTAGGCACCATCAATAGATCGGA3424630.2800346328649416No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATGGCCCTGTAGGCACCATC3386420.2769101717343175No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATGGCCTGTAGGCACCAT3177050.25978982557051794No Hit
AAGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGG3155170.2580006811178078No Hit
TTGCGTGCCTTGTTGTAGACGGCCTTGGCTGTAGGCACCATCAATAGATC3077780.2516724412094329No Hit
AAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGAAGAGCACAC2840770.23229195095637784No Hit
TAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAAGAGCACAC2774920.2269073457364982No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGG2707560.22139926665356588No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATC2694780.22035423620998104No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCTGTAGGCACCATCAATAGATCGG2680650.2191988152265809No Hit
ACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGGAAGAG2582520.21117464954356213No Hit
ATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATCGGAAG2577430.21075843632307328No Hit
CTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAA2559310.2092767499664413No Hit
TCCAACGGGGCCTTTCCTTCTGGCTGTAGGCACCATCAATAGATCGGAAG2547790.2083347506933507No Hit
TATTCCAGGGGGCATGCCTGTTTGAGCGTCCTGTAGGCACCATCAATAGA2392760.1956578281840426No Hit
TGATGATTCATAATAACTTTTCGAATCGCATGGCCCTGTAGGCACCATCA2375780.1942693605054768No Hit
TCCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGGAA2341810.19149160744064292No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCCTGTAGGCACCATCAATA2315270.18932141119864437No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCCTGTAGGCACCATCAATAGAT2313580.18918321859694964No Hit
TTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATCGGAAGA2277620.18624274169935098No Hit
TGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATCGG2274070.18595245546502187No Hit
TCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGG2180350.17828889887873303No Hit
TCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGGA2168280.177301925682014No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATA2105980.17220760669646348No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATGGCCTGTAGGCACCATC1975370.16152752639625878No Hit
AACTTTTCGAATCGCATCTGTAGGCACCATCAATAGATCGGAAGAGCACA1966350.16078995404875213No Hit
ATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATAGATCGGAAGA1938990.15855270577516206No Hit
TCTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCA1850860.15134624779447878No Hit
AGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAAGAGCACACG1843350.15073214931002477No Hit
TTGCCTTGTTGTAGACGGCCTTGGCTGTAGGCACCATCAATAGATCGGAA1830200.14965686368145353No Hit
AACGGGGCCTTTCCTTCTGGCTCTGTAGGCACCATCAATAGATCGGAAGA1772900.14497139854707078No Hit
TTGTGGCGTCGCTGAACCATAGCCTGTAGGCACCATCAATAGATCGGAAG1729220.1413996513032691No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTCTGTAGGCACCATCAAT1696480.13872247628582246No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTGTAGGCACCATCAATAGATCG1683420.13765455002657223No Hit
TTCCAACGGGGCCTTTCCTTCTGGCTCTGTAGGCACCATCAATAGATCGG1662530.13594635863639323No Hit
ATGTATTTATTAGATAAAAAATCCTGTAGGCACCATCAATAGATCGGAAG1638400.13397322995065755No Hit
AATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGAAGAGCACACG1636330.1338039644562741No Hit
GATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATC1632560.1334956886524936No Hit
ACGCGAAACTCAGGTGCTGCAATCTCTGTAGGCACCATCAATAGATCGGA1624670.13285051727535083No Hit
AGGGGGCATGCCTGTTTGAGCGTCCTGTAGGCACCATCAATAGATCGGAA1569860.12836866135884964No Hit
ATCTGGTTGATCCTGCCAGTAGTCCTGTAGGCACCATCAATAGATCGGAA1536180.1256146218173835No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCACTGTAGGCACCATCAAT1522640.12450744558842115No Hit
AAACTTTTCGAATCGCATGGCCCTGTAGGCACCATCAATAGATCGGAAGA1497130.12242147323976314No Hit
TAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGGAAGAGCACAC1486810.12157759889095286No Hit
TTTGTGGCGTCGCTGAACCATAGCCTGTAGGCACCATCAATAGATCGGAA1479210.12095614103717783No Hit
TGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATAG1466600.1199250116245327No Hit
AACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAATA1459400.1193362620788511No Hit
CCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAA1431280.11703686801988351No Hit
TTTTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGAT1371610.11215760616004726No Hit
TTGCTCGAATATATTAGCATGGAATCTGTAGGCACCATCAATAGATCGGA1367400.11181335121736398No Hit
TCTACATGGTATAACTGTGGTAATTCTCTGTAGGCACCATCAATAGATCG1363350.11148217959791808No Hit
AAGAGGTGCACAATCGACCGATCCTGTAGGCACCATCAATAGATCGGAAG1357570.11100954454596812No Hit
TCAAGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGAT1345540.11002584218005845No Hit
GATGTATTTATTAGATAAAAAATCACTGTAGGCACCATCAATAGATCGGA1327620.10856050997747313No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATCTGTAGGCACCATCAATAGA1323370.10821298420398054No Hit
AACGGGGCCTTTCCTTCTGGCCTGTAGGCACCATCAATAGATCGGAAGAG1310920.10719493811457276No Hit
CTTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATC1279370.10461507031370408No Hit
AGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGGAAGAGCACAC1276730.1043991954802875No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCCTGTAGGCACCATCAATAGATC1229780.10056005781782205No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)