FastQCFastQC Report
Mon 10 Jul 2023
SRR6398763_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6398763_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112501845
Total Bases5.6 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATC28084392.4963492820939956No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGAT17096331.519648855536547No Hit
TCCAACGGGGCCTTTCCTTCTGGCCTGTAGGCACCATCAATAGATCGGAA14016411.2458826786351815No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCG10457860.9295723105696622No Hit
ATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATCG10436700.9276914525268453No Hit
TCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAA9805800.8716123722237621No Hit
ACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAAGA8830440.7849151273919108No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAGA8623980.7665634283597749No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCG8520090.7573289131391578No Hit
TCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGA8152390.7246450047108116No Hit
TTCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGA7721520.6863460772576663No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAA7331650.6516915344810568No Hit
ATGTATTTATTAGATAAAAAATCACTGTAGGCACCATCAATAGATCGGAA6997130.6219569110177704No Hit
TGATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGAT6378820.5669969234726773No Hit
ACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGGAAG5923310.526507809716365No Hit
TATCTGGTTGATCCTGCCAGTAGTCCTGTAGGCACCATCAATAGATCGGA5305580.4715993768813303No Hit
TCGGGGCTGATCCGGGTTGAAGACCTGTAGGCACCATCAATAGATCGGAA5168670.4594297986846349No Hit
AAGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCG4974250.4421483043233646No Hit
CCAACGGGGCCTTTCCTTCTGGCCTGTAGGCACCATCAATAGATCGGAAG4762170.42329705792824995No Hit
TCCAACGGGGCCTTTCCTTCTGGCTCTGTAGGCACCATCAATAGATCGGA4642560.4126652322901905No Hit
TGATGTATTTATTAGATAAAAAATCACTGTAGGCACCATCAATAGATCGG4622300.410864372935395No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATC4456460.3961232813559636No Hit
TAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAAGAGCACAC4097500.3642162490757374No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCTGTAGGCACCATCAATAGATCGG3823180.33983264896677917No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAAT3758840.3341136316475521No Hit
TTGTGGCGTCGCTGAACCATAGCCTGTAGGCACCATCAATAGATCGGAAG3425050.30444389600899435No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGG3293150.29271964384228544No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTGTAGGCACCATCAATAGATC3231930.2872779553081996No Hit
TCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGGA3068780.27277597091852135No Hit
TCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGG2908990.25857264829745685No Hit
TTCCAACGGGGCCTTTCCTTCTGGCCTGTAGGCACCATCAATAGATCGGA2891230.2569940075204989No Hit
TTTGTGGCGTCGCTGAACCATAGCCTGTAGGCACCATCAATAGATCGGAA2856680.253922946774784No Hit
ATCTGGTTGATCCTGCCAGTAGTCCTGTAGGCACCATCAATAGATCGGAA2693510.23941918463648307No Hit
TCCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGGAA2623910.2332326194294858No Hit
TCTACATGGTATAACTGTGGTAATTCTCTGTAGGCACCATCAATAGATCG2615900.23252063110609428No Hit
TATACAGTGAAACTGCGAATGGCTCCTGTAGGCACCATCAATAGATCGGA2585540.22982200869683514No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATCTGTAGGCACCATCAATAGA2568320.22829136713269013No Hit
TCCAACGGGGCCTTTCCTTCTGGCTGTAGGCACCATCAATAGATCGGAAG2446360.2174506560314633No Hit
ACGCGAAACTCAGGTGCTGCAATCTCTGTAGGCACCATCAATAGATCGGA2413710.21454848140490496No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAGAT2381380.21167475075630984No Hit
AAGAGGTGCACAATCGACCGATCCTGCTGTAGGCACCATCAATAGATCGG2334890.20754237408284285No Hit
TAAGCGCAAGTCATCAGCTTGCGTTGATTCTGTAGGCACCATCAATAGAT2296930.20416820719695752No Hit
TTTTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGAT2262820.20113625692094206No Hit
TTGCCTTGTTGTAGACGGCCTTGGCTGTAGGCACCATCAATAGATCGGAA2236540.19880029523071377No Hit
TGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATCGG2233970.19857185453269677No Hit
TTCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGG2208240.19628478092959273No Hit
TCGGGGCTGATCCGGGTTGAAGACATTGTCCTGTAGGCACCATCAATAGA2136620.18991866311170275No Hit
TTGACCTCAAATCAGGTAGGAGTCTGTAGGCACCATCAATAGATCGGAAG2054100.18258367229444106No Hit
TTTTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGA2052250.18241923054684125No Hit
TTGCGTGCCTTGTTGTAGACGGCCTTGGCTGTAGGCACCATCAATAGATC2025640.18005393600433842No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCCTGTAGGCACCATCAATAGAT1943960.17279361062923013No Hit
ACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGGAAGAG1839180.1634799855949029No Hit
CCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAA1804370.16038581411709293No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAATA1774680.15774674628669424No Hit
TCAAGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGAT1734380.154164582811953No Hit
ATGCCGACTAGGGATCGGGTGGTGTTCTGTAGGCACCATCAATAGATCGG1705230.1515735141943672No Hit
TTTGCTCGAATATATTAGCATGGAATCTGTAGGCACCATCAATAGATCGG1696110.15076286082241586No Hit
GATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGATC1685360.1498073209377144No Hit
GATGTATTTATTAGATAAAAAATCACTGTAGGCACCATCAATAGATCGGA1672230.14864022896691162No Hit
ATGTATTTATTAGATAAAAAATCCTGTAGGCACCATCAATAGATCGGAAG1666340.14811668199752637No Hit
AAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAATAGATCGGAAGA1605080.14267143796619514No Hit
ATATGCTTGTCTCAAAGATTAAGCCATGCCTGTAGGCACCATCAATAGAT1604820.14264832723410004No Hit
CTTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATC1524830.13553822161760992No Hit
TAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGGAAGAGCACA1521250.13522000461414654No Hit
TCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGGAAG1501330.13344936698593698No Hit
GCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAA1497430.1331027060045104No Hit
TCGGGTCTTGTAATTGGAATGAGTACCTGTAGGCACCATCAATAGATCGG1494640.1328547100716437No Hit
TGTTTTCATGCCAGGTCGTACTGATCTGTAGGCACCATCAATAGATCGGA1467610.13045208280806417No Hit
TGTGGCGTCGCTGAACCATAGCCTGTAGGCACCATCAATAGATCGGAAGA1466270.13033297365034324No Hit
AGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGAAGAGCACACG1437640.12778812649694768No Hit
TTTCGGTGCCCGAGTTGTAATTTGCTGTAGGCACCATCAATAGATCGGAA1435750.12762012925210248No Hit
TTGATGTATTTATTAGATAAAAAATCAATGCTGTAGGCACCATCAATAGA1410870.12540860996546324No Hit
TCGTGAATCATCGAATCTTTGAACGCACCTGTAGGCACCATCAATAGATC1381760.12282109684512285No Hit
AGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGGAAGAGCACAC1327830.1180273976840113No Hit
GTCTAGTCGGTTATGGCATCTGCCTGTAGGCACCATCAATAGATCGGAAG1289230.1145963428421996No Hit
TTTCCACGTTCTAGCATTCAAGGTCCTGTAGGCACCATCAATAGATCGGA1285750.11428701458184976No Hit
TCGGGTCTTGTAATTGGAATGAGTCTGTAGGCACCATCAATAGATCGGAA1267080.11262748624255896No Hit
TTATCTGGTTGATCCTGCCAGTAGTCCTGTAGGCACCATCAATAGATCGG1247220.1108621818602175No Hit
ATTAAATCAGTTATCGTTTATTTGATAGTTCTGTAGGCACCATCAATAGA1225180.10890310287800169No Hit
TCTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCA1219660.10841244425813638No Hit
TTCCAACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAG1207050.10729157375152382No Hit
TATGCTTGTCTCAAAGATTAAGCCATGCCTGTAGGCACCATCAATAGATC1138520.10120011809584102No Hit
TTCGGGGCTGATCCGGGTTGAAGACCTGTAGGCACCATCAATAGATCGGA1137260.1010881199326109No Hit
TTCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGGAA1125480.10004102599384036No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)