FastQCFastQC Report
Fri 7 Jul 2023
SRR6441645_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6441645_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36277687
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAAAAAAAAAA909290.2506471815581848No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCAAAAAAAAAA512340.14122730591947608No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAAAAAAAAAAAAAAAAAAA391500.10791757478915344No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAAAAAAAAAAAAA388700.10714575049947368No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)