FastQCFastQC Report
Tue 4 Jul 2023
SRR6441649_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6441649_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26569659
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAAAAAAAAAA686280.25829462094338507No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCAAAAAAAAAA332480.12513521532210858No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAAAAAAAAAAAAAAAAAAA315680.1188122135854284No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAAAAAAAAAAAAA288130.1084432434755749No Hit
TATGGGTTCGACCCCCATCGTGAGTGCCAAAAAAAAAAAAAAAAAAAAAT285570.10747973844903316No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)