FastQCFastQC Report
Mon 10 Jul 2023
SRR6441650_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6441650_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31750606
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAAAAAAAAAA775500.24424730664983213No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCAAAAAAAAAA407790.1284353438797357No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAAAAAAAAAAAAAAAAAAA374590.11797885054540376No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAAAAAAAAAAAAA343410.10815856554044984No Hit
TATGGGTTCGACCCCCATCGTGAGTGCCAAAAAAAAAAAAAAAAAAAAAT336520.10598852821895746No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)