FastQCFastQC Report
Tue 4 Jul 2023
SRR6441651_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6441651_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31926172
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAAAAAAAAAA775960.24304824267688593No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAGCAAAAAAAAAA405920.12714333556807247No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAAAAAAAAAAAAAAAAAAA374280.11723297111849175No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTTAAAAAAAAAAAAAA349900.10959660306284136No Hit
TATGGGTTCGACCCCCATCGTGAGTGCCAAAAAAAAAAAAAAAAAAAAAT334820.10487320559445712No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)