FastQCFastQC Report
Tue 4 Jul 2023
SRR6441675_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6441675_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15859091
Total Bases808.8 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTCCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAAAAAAAAAATC575550.3629148732421045No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAAAAAAAAAAAAAAA451630.2847767252234065No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAAAAAAAAAAAAAA397930.2509160203444195No Hit
TCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAAAAAAAAAAATCTCG392180.2472903396543976No Hit
TCCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAAAAAAAAAAATCTC367950.23201203650322708No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAAAAAAAAAAAAAAA329180.2075654903550273No Hit
TCCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAAAAAAAAAATCTCG242110.1526632264106436No Hit
TCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAAAAAAAAAATCTCGT223270.14078360481064142No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTTAAAAAAAAAAAAAAAAAAA219190.13821094790363458No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAAAAAAAAATCT208020.13116766906753988No Hit
ACTGCCAGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAAAAAAA191580.12080137505989466No Hit
ATGATTAATAGGGACGGTCGGGGGCAAAAAAAAAAAAAAAAAAAAATCTC182980.11537861785394887No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAAAAAAAAAAAAAAAAAA180540.11384006813505262No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTTAAAAAAAAAAAAAAAAAAAA174940.11030897041955305No Hit
AGAGGGTGAGAATCCCGTGTGGCGAGGAGTGAAAAAAAAAAAAAAAAAAA173590.10945772364885226No Hit
AGAGGGTGAGAATCCCGTGTGGCGAGGAGTAAAAAAAAAAAAAAAAAAAA165710.10448896472061354No Hit
TCCGATATAGTGTAACGGCTATCACATCACGAAAAAAAAAAAAAAAAAAA164360.10363771794991276No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTAAAAAAAAAAAAAAAAAAAA164340.10362510688664311No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)