FastQCFastQC Report
Tue 4 Jul 2023
SRR6441679_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6441679_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13562955
Total Bases691.7 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTAAAAAAAAAAAAAAAAA861880.6354662387363226No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAAAAAAAAAAAAAAAAAA729860.5381275688078299No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAATAAAAAAAAAAAAAAAA717170.5287712006712402No Hit
TGCTCGAATATATTAGCATGGAATAATAGAATAAAAAAAAAAAAAAAAAA690930.5094243842879372No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAATAAAAAAAAAAAAAAAAA683500.5039462270574517No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAAAAAAAAAAAAAAAAAAAA630040.4645300378862866No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAA552290.40720477211640094No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCAAAAAAAAAAAAAAAAAAAAA501860.37002260937974063No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAAA421290.31061815069061277No Hit
TGCTCGAATATATTAGCATGGAATAATAGAAAAAAAAAAAAAAAAAAAAA392440.28934697490333045No Hit
TTGGGCCAGCATCAGTTTTGGTGGCAGGATAAAAAAAAAAAAAAAAAAAA384360.2833895710779841No Hit
ACTGCCAGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAAAAAAA330460.24364896882722092No Hit
AATACTGCCAGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAAAA302650.22314458759171582No Hit
ATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAAAATCTCGTATG290600.2142600930254506No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAACAAAAAAAAAAAAAAAA283290.20887041208940085No Hit
TATTCCAGGGGGCATGCCTGTTTGAGCGTCAAAAAAAAAAAAAAAAAAAA259590.19139634393832317No Hit
TATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTAAAAAAAAAAAAAAAA259430.19127837554574206No Hit
GAATACTGCCAGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAAA234530.172919544450306No Hit
TGCTCGAATATATTAGCATGGAATAATAGAACAAAAAAAAAAAAAAAAAA231890.17097306597271758No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAACAAAAAAAAAAAAAAAAA229760.1694026117464815No Hit
TTGCTCGAATATATTAGCATGGAATAAAAAAAAAAAAAAAAAAAAATCTC225710.16641653680927201No Hit
ATAATAACTTTTCGAATCGCAAAAAAAAAAAAAAAAAAAATCTCGTATGC216170.15938267140162302No Hit
AGGGGGCATGCCTGTTTGAGCGTCAAAAAAAAAAAAAAAAAAAAATCTCG207360.15288703678512536No Hit
TTGCTCGAATATATTAGCATGGAATAATAAAAAAAAAAAAAAAAAAAAAT207330.15286491771151642No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAAAAAAAAAAAAAAA193430.14261641360603203No Hit
ACTGCCAGCTGGGACTGAGGACTGCGACGAAAAAAAAAAAAAAAAAAAAT188300.1388340520189No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATAAAAAAAAAAAAAAAAAAA183760.13548669887941087No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCAAAAAAAAAAAAAAAAAAAAT181310.13368030786801255No Hit
TGCTCGAATATATTAGCATGGAATAATAGAAAAAAAAAAAAAAAAAAAAT174900.1289541991402316No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAAAAAAAAAAAAAAA173260.12774502311627517No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAAAAAAAAAAAAAA166260.12258390594085138No Hit
TTGCCCGCGCAGGTTCGAGTCCTGCAGTTGTCGCCAAAAAAAAAAAAAAA165060.12169914299649301No Hit
TTGCTCGAATATATTAGCATGGAATAAAAAAAAAAAAAAAAAAAATCTCG163970.12089548332203419No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTAAAAAAAAAAAAAAAAAA163720.12071115770862618No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGCCAAAAAAAAAAAAAAAAAAAAA159190.11737117759367335No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCAAAAAAAAAAAAAAAAAAAAATCT139480.10283894623258723No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTCAAAAAAAAAAAAAAAAA138440.10207215168080996No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)