FastQCFastQC Report
Tue 4 Jul 2023
SRR6441699_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6441699_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14578021
Total Bases743.4 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAAATCT279770.19191219439181764No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAATC217550.14923150405668917No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAATCTC190660.13078592766466723No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAATCT157880.10830002234185285No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)