FastQCFastQC Report
Tue 4 Jul 2023
SRR6441700_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6441700_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14754114
Total Bases752.4 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAAATCT288040.19522690417059269No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAATC220600.14951761928910132No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAATCTC200380.13581296714936594No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAATCT157770.10693288665114015No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)