FastQCFastQC Report
Tue 4 Jul 2023
SRR6441705_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6441705_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12589349
Total Bases642 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAAATCT435710.34609414672672906No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAATC337370.26798049684697756No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAATCTC286860.22785928009462603No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAATCT238430.1893902536183563No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAAATCC180820.14362934890437942No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAAAATC168990.13423251670916422No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAATCTCG166660.1323817458710534No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAAAA155210.12328675613012237No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAATCCC145110.11526410142414831No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAAAT130980.10404032805826577No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAAAAAAAAAAAAAAAAC129070.10252317256436373No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)