FastQCFastQC Report
Mon 26 Jun 2023
SRR648667.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR648667.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50184481
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length36
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA19473323.8803469941235416No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA11290382.2497751844838247No Hit
GGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA9790621.9509258250573518No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA7796491.5535659320657318No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA7113711.4175119196709436No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAA7097391.4142599183201674No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAA7082271.411247034715772No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA5784391.1526252508220618No Hit
GGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAA5210841.038336931291568No Hit
GGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAA4309880.8588073273090141No Hit
TGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA4227490.8423899013720995No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA3686000.7344900109657406No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3239900.6455979887487528No Hit
GCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA2971710.5921571650805755No Hit
GGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAA2961260.5900748480391776No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAA2828300.5635806017402073No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAA2779260.5538086565047868No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA2625610.5231916217286376No Hit
TGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA2391170.47647598467741453No Hit
GCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAA2348820.46803712087806587No Hit
GGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAA2261600.4506572460119694No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA2169220.43224916483643616No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA2022210.4029552482569263No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAAAA2018320.40218010822907585No Hit
GGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAA1939510.38647605023553No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCGAAAA1880420.37470149387417195No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCAAAAA1775870.3538683602207623No Hit
GGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA1655520.3298868429066747No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAA1475610.2940371147805633No Hit
TGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAA1422400.2834342353764703No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA1341410.26729578014366634No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAA1305300.26010032862549676No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAA1266790.25242664161456607No Hit
CGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAA1253430.24976446403819538No Hit
TCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA1208140.2407397617602143No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAA1149390.22903295542699742No Hit
GGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAA1126100.2243920784993273No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA1110390.22126162866962798No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA1084730.21614849419285617No Hit
TGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA1055710.21036583002621867No Hit
AGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAA1053180.2098616901109329No Hit
CCGTCGGGCCCGGGGGAAAAAAAAAAAAAAAAAAAA1028970.2050374895777043No Hit
TCGCCGTCGGGCCCGGGGGAAAAAAAAAAAAAAAAA994470.1981628543692621No Hit
CGCCGTCGGGCCCGGGGGAAAAAAAAAAAAAAAAAA911770.1816836563478658No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA906550.18064349415111017No Hit
CGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAA884740.1762975291106428No Hit
CCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAA868240.17300966009790955No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCTCAAAAAAAA797700.15895352190650333No Hit
TTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCA794810.1583776466673034No Hit
GCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA794420.1582999333997297No Hit
CTCGCCCGTCACGCACCGCACGTTCGTGGGGAAAAA757300.15090322444502316No Hit
TGATCAAAACCAACCCGGAAAAAAAAAAAAAAAAAA757160.1508753273746121No Hit
TCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAA753200.1500862388115561No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAA746230.14869736323466212No Hit
GGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA717130.1428987578849326No Hit
TGATCAAAACCAACCCGGTAAAAAAAAAAAAAAAAA707040.14088817616744906No Hit
CCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA706030.14068691873091205No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAA700190.13952321236519313No Hit
CAGATCAAAACCAACCCGGTAAAAAAAAAAAAAAAA681780.13585474760613744No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAA667960.13310090822698753No Hit
TCGCCGTCGGGCCCGGGGGTAAAAAAAAAAAAAAAA651660.1298528921719844No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA640150.12755935445461716No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAAAAA632690.12607283913128445No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGGAAAAAA619590.12346247039996289No Hit
CGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAA607580.1210693002882704No Hit
GGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAA592860.11813612259933505No Hit
CAGATCAAAACCAACCCGGAAAAAAAAAAAAAAAAA589510.11746858555735586No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCAAAAAA587640.11709596040257943No Hit
AAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAA572570.11409304003761642No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA568150.1132122896717812No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCAAAA567250.11303295136199576No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAA560930.11177359789772459No Hit
TAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAA560630.11171381846112945No Hit
CAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA547340.10906558941996432No Hit
CGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA543910.1083821111948931No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCAAA537500.1071048238996434No Hit
GATCAAAACCAACCCGGTAAAAAAAAAAAAAAAAAA528090.1052297422384422No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAA522450.10410588883045338No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAA510860.1017964099299941No Hit
CGGGGCTACGCCTGTCTGAGCGTCGTTAAAAAAAAA504580.10054502705726896No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)