FastQCFastQC Report
Thu 29 Jun 2023
SRR648668.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR648668.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95471801
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length36
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA43343054.539879791311363No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA20617052.159491052232271No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAA19874482.0817120649059504No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA19528982.0455233687274843No Hit
GGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA19019101.9921170231197376No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA18839201.973273762794105No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA15766211.6513996630272012No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAA14543581.5233377654622855No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA13787591.4441531274768766No Hit
TGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA10553931.1054499746998592No Hit
GGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAA8415740.8814896034065598No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA7513850.7870229660797956No Hit
GGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAA7427220.7779490825777969No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAA7376060.7725904322261606No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA6273370.6570914064981345No Hit
TGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA5814730.6090520906796343No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAAAA5616440.588282607133388No Hit
GCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA5240190.5488730646235531No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA5190050.5436212521014452No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCGAAAA4890340.5122287365250394No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCAAAAA4829350.5058404627770665No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAA4815390.5043782509141103No Hit
GGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAA4639440.48594872532047445No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAA4065990.4258838691018304No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAA3997900.41875192026596414No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA3937440.4124191602921579No Hit
GCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAA3837520.40195324271718724No Hit
TCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA3807880.3988486610826583No Hit
GGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA3518640.3685528044034699No Hit
TGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAA3390690.3551509413758729No Hit
GGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAA3351320.3510272106420198No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAA3206620.3358709028648156No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAA2988880.3130641685496223No Hit
GGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAA2710090.28386287590824855No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAA2675920.2802838086190497No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA2627560.2752184385837657No Hit
TCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAA2412010.25264109137314794No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA2401450.25153500560861947No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGGAAAAAA2343830.24549971566997045No Hit
CTCGCCCGTCACGCACCGCACGTTCGTGGGGAAAAA2326600.24369499429470282No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA2239170.2345373164166035No Hit
TGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA2231290.23371194181201213No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAAAAA2106310.2206211654056887No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCAAAAAA2103160.22029122504979246No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAA1956740.20495475936397178No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1874830.19637526268096694No Hit
CGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAA1835500.19225572166591892No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAA1826640.19132769895060425No Hit
CCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA1793790.1878868923819715No Hit
GCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA1745210.1827984788932598No Hit
CCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1688440.17685222047921773No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA1585030.16602074993850802No Hit
AGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAA1544560.1617818019375166No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAA1521060.15932034213956014No Hit
CCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAA1488590.15591933789957518No Hit
GGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAA1477770.15478601896281394No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAA1470700.1540454861640245No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCAAAAA1451980.15208469776326938No Hit
CAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1442580.1511001138440868No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCTAAAAA1409320.14761636265770245No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCGCAAA1348130.1412071403157043No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAA1347200.1411097293534873No Hit
CGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAA1337060.14004763563641162No Hit
GGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA1288780.13499064503873767No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCCAAA1227620.1285845649858433No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAA1192910.12494893649277654No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCAAA1190170.12466194075463183No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1189910.12463470758239913No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA1172440.12280484789430127No Hit
TCGCCCGTCACGCACCGCACGTTCGTGGGGAAAAAA1171470.12270324721327924No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAAA1157400.12122951362360913No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGAAAAAAA1150510.12050783455944232No Hit
CCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAA1125010.11783688882123423No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCTCAAAAAA1123760.11770596010857698No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAA1099910.11520784027107649No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCTCAAAAAAAA1058480.11086833901876429No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCCGAA1056160.11062533532807244No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGAAAAAAA1056140.1106232404686699No Hit
CGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAA1055330.11053839866286799No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCTAAA1009730.10576211922513121No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCAAAA992850.10399405788940758No Hit
GGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAA990330.10373010560469054No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAA969380.10153574038055488No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)