FastQCFastQC Report
Mon 3 Jul 2023
SRR648669.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR648669.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92525256
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length36
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA40395874.365929017262054No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA32105623.4699304155397312No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA30786583.3273704208935126No Hit
GGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA19583142.1165183266285696No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA17637201.9062038585443093No Hit
TGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA16734101.8085980761836529No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA15930221.721715852372243No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA11547411.248027889812053No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAA9773591.0563159101121535No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA9432911.0194956931543102No Hit
TGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA9310941.0063133464877958No Hit
GCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA8645700.9344151395809162No Hit
GGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAA7966580.8610168017260066No Hit
GGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAA7852620.8487001646339676No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAA7185640.7766139009655915No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA6711220.7253392522361678No Hit
GGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAA6654730.7192338922034434No Hit
GCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAA5287930.5715120636899399No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAA5011620.5416488661214836No Hit
TCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA4738350.5121142274926536No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA4614510.4987297738468294No Hit
TGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAA4383270.47373767871552824No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCAAAAA4251560.4595026464990272No Hit
GGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAA4033510.4359361080827488No Hit
GGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA3914280.4230498967762921No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCGAAAA3851970.41631551929994115No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA3830350.41397885999904716No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAA3376040.36487767188669No Hit
TGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA3180760.343772083159651No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAAAA2976070.3216494748201507No Hit
GCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA2920930.3156900208954839No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAA2832430.30612506492281416No Hit
GGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAA2822580.30506049072698593No Hit
TCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAA2721410.29412617891054527No Hit
AGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAA2714820.2934139409460267No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA2633760.2846530897466525No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAA2620090.2831756553043204No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAAAAA2430320.2626655796553538No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAA2412970.26079041597031627No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA2089660.22584752426948163No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA2074720.2242328300069767No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCAAAAAA2036020.22005018824265668No Hit
TAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAA2026940.2190688345677206No Hit
CAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA2011320.21738064685819405No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGGGAAAAAA2006050.21681107264377633No Hit
CCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA1870820.2021956037603398No Hit
GGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAA1751260.18927372651635785No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1730580.1870386610981114No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAA1699970.18373037519615185No Hit
CTCGCCCGTCACGCACCGCACGTTCGTGGGGAAAAA1613810.17441832314411537No Hit
CCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAA1612030.17422594323867638No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA1605520.17352235156204268No Hit
TCGCCCGTCACGCACCGCACGTTCGTGGGGAAAAAA1591780.17203735161781125No Hit
AAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAA1559440.16854208974034074No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCAAAAA1519060.16417787593043784No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAA1511250.16333378207567456No Hit
CGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAA1451060.1568285312282735No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAA1409960.1523865008274065No Hit
TCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAA1375220.14863185031338905No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGAAAAAA1367670.14781585689425167No Hit
CGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA1287610.13916308429343874No Hit
GGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA1282670.13862917601654623No Hit
TGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAA1188360.12843628338623564No Hit
ACGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA1116250.12064273564398462No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAA1112080.12019204788798422No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGAAAAAAA1093170.11814828158919118No Hit
AAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAA1088680.1176630086816512No Hit
AAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAA1087520.11753763750732016No Hit
GCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA1078050.11651413317894523No Hit
CCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAA1062360.11481837996751935No Hit
AAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA1024840.11076327094950163No Hit
TGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAA1023490.11061736484144394No Hit
GGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAA1021890.11044443908374596No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA1002170.1083131291201183No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA945680.10220776908739383No Hit
TCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAAAA941180.10172141539386824No Hit
CGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAA927830.10027856610307567No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)