FastQCFastQC Report
Thu 29 Jun 2023
SRR648670.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR648670.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100614542
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length36
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA49519594.9217130064558665No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA27322472.7155587509407932No Hit
GGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA25402452.5247294769775923No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA24913262.476109268578691No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAA19927371.980565592595949No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA19251691.9134102901347996No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA17740291.763193435795792No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAA14992491.4900917602944515No Hit
GGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAA13103061.302302802312612No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA11801371.172928859528079No Hit
TGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA10784031.0718162390482282No Hit
GGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAA10298871.0235965691718798No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAA8386750.8335524699799359No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA8270360.8219845596474514No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA7975550.7926836261899397No Hit
TGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA6353970.6315160685221823No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAA6058900.6021892938696675No Hit
GGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAA6029160.5992334587181245No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA5520210.5486493194989647No Hit
GCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA5092450.506134590365675No Hit
GGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAA4891570.48616928554920025No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA4793750.47644703287522794No Hit
GGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAA4706500.4677753241673554No Hit
GGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAA4622060.4593828991439428No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCGAAAA4325790.42993685743756604No Hit
GCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAA4007690.398321149243019No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCAAAAA3924870.3900897347423199No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAA3651640.3629336204700907No Hit
TGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAA3625040.36028986744281954No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAA3572890.3551067200604064No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAA3305240.32850519758863483No Hit
TCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA3073010.30542404099001913No Hit
CGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAA3055990.3037324366094118No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAA2914950.2897145822121816No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCAAAAAA2808700.27915447848482977No Hit
CGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAA2796520.27794391788813194No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCAAAA2780310.2763328187688813No Hit
TGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA2567440.25517583730590354No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAA2539270.2523760432164965No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAA2410110.23953893265249868No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2347290.23329530238283053No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAA2265560.22517222212272256No Hit
GGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAA2155440.21422748214666626No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAA2084090.20713606190246336No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2071810.20591556238461037No Hit
GCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAA1960860.19488832936296624No Hit
TCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAA1952570.19406439279920393No Hit
GGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAA1950830.1938914555711042No Hit
GCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA1911360.18996856339116466No Hit
CTCGCCCGTCACGCACCGCACGTTCGTGGGGAAAAA1880980.18694911914422868No Hit
CCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAA1876710.18652472721090357No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAA1864840.18534497726978671No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1848290.1837000858186086No Hit
CCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAA1730040.17194731155263818No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAA1715730.17052505193533554No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAA1634780.16247949526023783No Hit
CCACCCCTCCCACGGCGCGACCAAAAAAAAAAAAAA1604380.1594580632290708No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAA1603850.1594053869469485No Hit
CAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1558810.15492889685866681No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAA1541620.15322039631209572No Hit
CCGTCGGGCCCGGGGGAAAAAAAAAAAAAAAAAAAA1530550.15212015774022009No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCTCAAAAAAAA1464000.14550580571146465No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGAAAAAAA1446670.14378339067527635No Hit
GGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAA1440300.143150281397693No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCAAAA1424840.14161372418710608No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAA1411450.14028290264443086No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAA1403270.1394698988939392No Hit
CGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAA1396980.13884474075327996No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCCAAA1351630.13433744000941733No Hit
CGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAA1350740.13424898361113644No Hit
TCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAA1329060.1320942255046989No Hit
CCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1306940.12989573614517871No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCCGAA1220420.12129658156173886No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCTAAAA1216300.1208870980101465No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1155930.11488697130877959No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCGCAAA1149780.1142757276577376No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCAAAA1140160.1133196034426117No Hit
TTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCA1119330.11124932616599298No Hit
TGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAA1117480.11106545612462261No Hit
CGGGGCTACGCCTGTCTGAGCGTCGTTAAAAAAAAA1093990.10873080354527678No Hit
CCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAA1092950.10862743876526317No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCAAA1088880.10822292467424838No Hit
AGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAA1087870.10812254157058132No Hit
GCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAA1033290.10269787840409789No Hit
GGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAA1015840.10096353666252339No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)