FastQCFastQC Report
Fri 7 Jul 2023
SRR6661166_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6661166_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20525181
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGTAGCTAATTAACACAATCCCGGGGCGTTCTAGCTATGGAATTCTCG644270.31389248163024724No Hit
CCGGTAGCTAATTAACACAATCCCGGGGCGTTCTAGCTATGGAATTCTCG279070.1359646962431172No Hit
CGGTTAGCTAATTAACACAATCCCGGGGCGTTCTAGCTATGGAATTCTCG265100.12915842252499504No Hit
GGGATAGCTAATTAACACAATCCCGGGGCGTTCTAGCTATGGAATTCTCG231770.11291983247309731No Hit
CGGGTAGCTAATTAACACAATCCCGGGGCGTTCTAGCTTTGGAATTCTCG211200.10289799636846078No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)