FastQCFastQC Report
Thu 6 Jul 2023
SRR6661172_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6661172_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22204739
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGTACCCATAGAGGGTGCCAGGCCCGTATAAGGGTTGGAATTCTCGGG287380.12942282275869127No Hit
TGGCTACCCATAGAGGGTGCCAGGCCCGTATAAGGGTTGGAATTCTCGGG247960.11166985570062318No Hit
TGGCACCCATAGAGGGTGCCAGGCCCGTATAAGGGTTGGAATTCTCGGGT247620.11151673523386156No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)