FastQCFastQC Report
Tue 4 Jul 2023
SRR6661177_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6661177_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13226527
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGTAGCTAATTAACACAATCCCGGGGCGTTCTAGCTATGGAATTCTCG361620.2734051047565245No Hit
CGGGTAGCTAATTAACACAATCCCGGGGCGTTCTAGTGTTGGAATTCTCG182680.13811637779138847No Hit
CCGGTAGCTAATTAACACAATCCCGGGGCGTTCTAGCTATGGAATTCTCG147790.1117375710192101No Hit
CGGGTAGCTAATTAACACAATCCCGGGGCGTTCTAGCTTTGGAATTCTCG144590.10931819063311177No Hit
CGGGTAGCTAATTAACACAATCCCGGGGCGTTCTAGGCTTGGAATTCTCG143490.10848652862539046No Hit
CGGGTAGCTAATTAACACAATCCCGGGGCGTTCTAGCTGTGGAATTCTCG142650.10785144127403966No Hit
CGGGTAGCTAATTAACACAATCCCGGGGCGTTCTAAGCTTGGAATTCTCG137270.10378385799991185No Hit
CGGGTAGCTAATTAACACAATCCCGGGGCGTTCTAGCTCTGGAATTCTCG136150.10293707486477743No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)