FastQCFastQC Report
Tue 26 Sept 2023
SRR6826875_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6826875_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32618766
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length45
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATTCTCTCTTTGCCTTTTGGCTTAGATCAAGTGTAGTATCTGT963920.29551087248364943No Hit
CCTGTATAAAAATAGAGGTAGGACTTGTTCCTACTCTCCTGTATC905740.27767451411252037No Hit
CCAGTTTAATCGCTGAAATCACCTCACTGAGGTGTTTCCGATTAA880530.2699458342476843No Hit
CCTGTATCTGTTTCTTGCCTTTTACCAGAAACAGCCGTTTGTAAG514500.15773128879246995No Hit
CCATTCTCTCTTTGCCTTTTGGCTTAGATCGAATTGGAATTCTCG356380.10925612575288716No Hit
CCATTCTCTCTTTGCCTTTTGGCTTAGATCAAGAATTGGAATTCT344910.10573974502898117No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)