FastQCFastQC Report
Tue 4 Jul 2023
SRR6841604_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6841604_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26746208
Total Bases779.6 Mbp
Sequences flagged as poor quality0
Sequence length15-76
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNN18488726.912650944761964No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC9705473.6287274816676818No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAG8848573.308345616694523No Hit
GTCGCGGCGTGGGAAATGTGGCGTACG7102882.6556587012259834No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG4944951.8488415254977453No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT3207691.1993064586950046No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG3131891.1709659926371618No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC2869451.0728436718954701No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA2525880.9443880792372511No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCCGGG2452750.9170458855326333No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGC2239320.8372476576866522No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC1939350.7250934412833401No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1867300.6981550431373299No Hit
GACGTACGCAGTTTTATCCGGTAAAGCG1569280.5867299020481707No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1515670.566685939180612No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT1439350.5381510530389954No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGC1429730.534554281489174No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAG1392660.5206943728247384No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG1339240.5007214480647125No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAGC1208730.45192574588517376No Hit
TCGACTGCATAATTTGTGGTAGTGGGG1079080.4034515846134151No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACG991750.3708002270826578No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGTCCGG899560.33633178953816556No Hit
CCGAATCCCGGGGCCGAGGAAGCCAG833760.3117301712452098No Hit
AACTGGTTATATATTGACACTAAGGGACG799440.29889844571611796No Hit
ACGTACGCAGTTTTATCCGGTAAAGCG730870.2732611665922885No Hit
GACGTACGCAGTTTTATCCGGTAAAGC687370.25699717881503054No Hit
GTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG651490.24358219303461634No Hit
TCAAAAAGTAAGTTTAGATTATAGCCAAA635870.237742112825863No Hit
TAAACGATGCCGACTGGCGATGCGGCGGCG628160.2348594611991352No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG582300.21771310534936394No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGC570580.21333117576891647No Hit
TTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG565260.21134210875799667No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG560730.2096484107205029No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCCGGG558990.20899785120941256No Hit
TTCGCCGAATCCCGGGGCCGAGGAAGCCAG523080.1955716488857037No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAG522160.19522767489133414No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT522080.19519776410921505No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAA521730.19506690443744398No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC517710.19356388763595947No Hit
AGGGCTTCTGTCGTGAGTGGCACACGCA510200.1907560129645294No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG497960.18617966330030783No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG487900.18241838244883163No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC477560.17855241385993859No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA438890.16409428955312097No Hit
CGACTGCATAATTTGTGGTAGTGGGG406570.1520103335770065No Hit
AGGTCGGTTTCTATCTATTTACGATTTCTC404110.15109057702684434No Hit
TAATCCACCTATAACTTCTCTGTTAACCCAAC389630.1456767254632881No Hit
TAAACGATGCCGACTGGCGATGCGGCGGC383530.14339602832670711No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCA369890.13829623997540136No Hit
AACTGGTTATATATTGACACTAAGGGACGA369830.13827380688881205No Hit
ATCGTATAGTGGTTAGTACTCTGC336330.12574866687644096No Hit
AAAAAGTAAGTTTAGATTATAGCCAAA335760.1255355525538424No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC335490.12543460366419046No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC333800.12480273839192456No Hit
CAGTGCGCCCCGGGCGTCGTCGCACCGTCGGGTC329740.12328476619938049No Hit
GCGACCGGCTCCGGGACGGCCGGG320240.11973286082273794No Hit
GCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG318160.11895518048764148No Hit
ATAAACGATGCCGACTGGCGATGCGGCGGC288560.10788819110357625No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG287550.10751056747932268No Hit
ATAAACGATGCCGACTGGCGATGCGGCGGCG283750.10608980532866566No Hit
TCGCCGAATCCCGGGGCCGAGGAAGCCAG283420.10596642335242439No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT279030.10432506918363904No Hit
ACTAAAATTGGAACGATACAGAGAA274680.10269867040591325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)