FastQCFastQC Report
Tue 4 Jul 2023
SRR6841605_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6841605_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28530369
Total Bases810.1 Mbp
Sequences flagged as poor quality0
Sequence length15-76
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNN19656646.889725120624973No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC6580402.30645457126755No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG5739302.01164590615705No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC5534631.939908313138186No Hit
GTCGCGGCGTGGGAAATGTGGCGTACG4847441.6990456730510566No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAG4718341.6537956449143718No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT2868381.0053778133749338No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG2842110.9961700810809703No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC2586050.9064201027333365No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG2440120.8552710972648129No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCCGGG2231900.7822892160981164No Hit
GACGTACGCAGTTTTATCCGGTAAAGCG2093530.7337900186289213No Hit
CGACTGCATAATTTGTGGTAGTGGGG1627120.5703115862258914No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACG1322770.4636357840306938No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCCGGG1314540.460751138549943No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1308460.45862007603196436No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAGC1219130.4273095801880445No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA1182170.4143549633024375No Hit
GACGTACGCAGTTTTATCCGGTAAAGC1047430.3671280942773646No Hit
CCGAATCCCGGGGCCGAGGAAGCCAG1022550.35840756213142566No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAG898110.31479088125358634No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAG896410.31419502495744095No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG890020.31195530629134166No Hit
GCACCACCGGCCCGTCTCGC875440.3068449622926363No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG847380.297009828369202No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAG815180.28572360911280187No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGC809980.28390098985400436No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGC791660.27747976200377916No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC710630.24907844689986308No Hit
CGTCGCGGCGTGGGAAATGTGGCGTAC687470.2409607811241418No Hit
GTCGCGGCGTGGGAAATGTGGCGTAC637950.2236038377211315No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG633050.2218863695734184No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG563170.19739317076480856No Hit
GCGACCGGCTCCGGGACGGCCGGG554300.19428420291374432No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGC552120.1935201048398638No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAA536680.1881083276560496No Hit
TCGACTGCATAATTTGTGGTAGTGGGG531070.18614200187876995No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGG511640.17933171491753228No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGC503450.17646108958492615No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG494500.17332408143757272No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGG433990.15211510233183453No Hit
GACTGCATAATTTGTGGTAGTGGGG420250.14729918144416568No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG403460.14141422426047137No Hit
GATCACCTGATACCATTCCGAACTCAGA385840.13523834900277665No Hit
ACGTACGCAGTTTTATCCGGTAAAGCG361170.12659142263459683No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA343490.12039451715468523No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGAT318400.11160037923098716No Hit
CGACTGCATAATTTGTGGTAGTGGGGG318160.11151625834211959No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGA312130.10940272100932168No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCCGG309800.10858604737989894No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT295070.10342312782565133No Hit
TCAAAAAGTAAGTTTAGATTATAGCCAAA285710.10014241315981579No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)