FastQCFastQC Report
Tue 4 Jul 2023
SRR6841606_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6841606_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28749882
Total Bases828.5 Mbp
Sequences flagged as poor quality0
Sequence length15-76
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNN9894513.4415828211051442No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT6200822.1568158088440157No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAG6058762.107403432125391No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC4029971.401734448857912No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG3832321.3329863406048066No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAG3634521.2641860582245172No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG3500731.2176502150513173No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCCGGG3140291.0922792657027252No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGC2623010.912355048970288No Hit
GTCGCGGCGTGGGAAATGTGGCGTACG2473500.8603513572681795No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC2360830.8211616312025211No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCCGGG1844540.6415817637094997No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGG1259440.438067884939493No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1150610.4002138165297513No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1143870.397869459081606No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG1123540.3907981257105681No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG1087800.37836677034013566No Hit
GACGTACGCAGTTTTATCCGGTAAAGCG1022060.35550058953285446No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGC945280.3287943929648129No Hit
GTCGCGGCGTGGGAAATGTGGCGTA943570.3281996079149125No Hit
GACGTACGCAGTTTTATCCGGTAAAGC864290.30062384256046687No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG784140.27274546726835264No Hit
ACGTACGCAGTTTTATCCGGTAAAGC702670.24440795965701706No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGC659700.229461811356304No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAA656750.2284357201883472No Hit
CGACTGCATAATTTGTGGTAGTGGGG589320.20498171088145684No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG580200.20180952394865484No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCCGG562490.19564949866576845No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACG560290.19488427813373288No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCCGG554750.19295731370306146No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAA551910.19196948356170646No Hit
GATCACCTGATACCATTCCGAACTCAGA551390.1917886132541344No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC550400.1914442640147184No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGG535890.1863972867784292No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAG505040.17566680795420309No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAG503560.1751520232326519No Hit
GTCGCGGCGTGGGAAATGTGGCGTAC491400.1709224406555825No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT471870.16412936929619398No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAGC465800.1620180562828049No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC442250.15382671831487865No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACG439210.15276932267061133No Hit
CGAATCCCGGGGCCGAGGAAGCCAG437090.15203192833974066No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA396100.13777447851785965No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG394180.13710664968990136No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGA382620.13308576362156896No Hit
ACGTACGCAGTTTTATCCGGTAAAGCG371340.12916226925731383No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC362460.1260735609280066No Hit
GCGACCGGCTCCGGGACGGCCGGG352690.12267528611073952No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGTCCGG345640.12022310213308006No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG342210.11903005375813369No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAG341220.11868570451871768No Hit
GAATACAAGCTTGGGCTGCAGGTCGACCCG333900.11613960711212659No Hit
GGCTGGTCCGAAGGTAGTGAGTTATCT324390.11283176744864552No Hit
TTAATCAGTGAAATTGACCTTTCAGTG306610.10664739423973983No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC298230.10373259966771342No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC295910.10292563983393045No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCA295030.10261955162111623No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGAT291680.10145432944733478No Hit
TGTCACTCTTCGGCCCCTGGGAAGGTCTGA289250.10060910858695003No Hit
CGTCGCGGCGTGGGAAATGTGGCGTAC288350.10029606382384457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)