FastQCFastQC Report
Tue 4 Jul 2023
SRR6841607_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6841607_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27482279
Total Bases791.3 Mbp
Sequences flagged as poor quality0
Sequence length15-76
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNN24815569.029658712074061No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT12156794.423501413401705No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC5891322.1436795689324017No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAG5162331.8784213638177532No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG4034251.4679459443665497No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG3475541.2646476662288453No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCCGGG3165841.1519568664592919No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG3116231.1339052339873268No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAG2443540.8891329572776697No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC2377440.8650810946210101No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC2233190.8125927256615071No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGC2112210.768571631195506No Hit
GTCGCGGCGTGGGAAATGTGGCGTACG2033140.7398003637180162No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1920550.6988321456164535No Hit
GACGTACGCAGTTTTATCCGGTAAAGCG1878550.6835495702521615No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCCGGG1750400.6369195218489704No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT1420660.5169367504055977No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGTCCGG1302520.4739490491308963No Hit
GACGTACGCAGTTTTATCCGGTAAAGC1272350.4629710658275466No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG1245310.4531319982596785No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA1207320.43930854497183436No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG1191400.4335157211670837No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAA954570.347340189654577No Hit
GATCACCTGATACCATTCCGAACTCAGA940110.3420786172791565No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACG882590.3211487664469166No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGG878860.31979152820623064No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT866170.3151740072211624No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAGC788330.28685030087934116No Hit
GTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG727860.26484703106318075No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAG692890.25212246771819763No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAG645970.23504964781123136No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGC643930.2343073512935372No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC627050.22816521148045985No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG621050.22598198642841813No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG602590.21926493068496977No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGC598640.2178276408590423No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCCGG583810.21243143627207917No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGATA559410.20355298772710956No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGC541640.19708700286464598No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCCGG521600.18979503119082664No Hit
CGTCGCGGCGTGGGAAATGTGGCGTAC478530.17412311402558717No Hit
ACGTACGCAGTTTTATCCGGTAAAGCG477990.17392662377090343No Hit
GTCGCGGCGTGGGAAATGTGGCGTAC475420.17299147570694554No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC468940.17063359265074052No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGAT462590.16832301280399636No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGA455210.16563764598998504No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGTCCGG442180.16089640891863444No Hit
CCGAATCCCGGGGCCGAGGAAGCCAG426110.15504900448758271No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA424070.15430670796988852No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC414540.15083901884556228No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAG400810.1458430721848068No Hit
AACTGGTTATATATTGACACTAAGGGACG391050.14229169276681894No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAAAG382200.1390714358150574No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAAA375420.13660439150625028No Hit
GCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG374400.13623324324740319No Hit
GGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG370580.1348432566309366No Hit
ACGTACGCAGTTTTATCCGGTAAAGC366780.1334605474313102No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAA365500.1329947927535413No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGG352310.12819533634746957No Hit
CGACTGCATAATTTGTGGTAGTGGGG351230.12780235583810207No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCA350340.1274785107887159No Hit
GCGACCGGCTCCGGGACGGCCGGG340490.12389438299494739No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACG330020.12008465527913462No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT311140.11321477378204332No Hit
GAACCTGGAGATAGCTGGTTCTCTTCGAAATAGC310970.11315291573890215No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCC307250.11179931620663627No Hit
GGAATGCCTAAAGGAAAGATCCAAAAA300960.10951056861041254No Hit
GCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG300290.10926677514626788No Hit
GTCGCGGCGTGGGAAATGTGGCGTA297390.10821154970444773No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGCCCG288900.10512228625580869No Hit
CGAATCCCGGGGCCGAGGAAGCCAG281820.10254608069439947No Hit
CAAAAAGTAAGTTTAGATTATAGCCAA279160.10157818425466099No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTG278250.10124706178843465No Hit
CGCCGCGACCGGCTCCGGGACGGCCGGGAAGGC275450.10022822343081518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)