FastQCFastQC Report
Tue 4 Jul 2023
SRR6841608_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6841608_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31089580
Total Bases885.7 Mbp
Sequences flagged as poor quality0
Sequence length15-76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNN26068468.384950842050616No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT7192362.313431059538276No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC4982811.6027267013578181No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAG3045640.9796336907735647No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAG2914380.937413757278162No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAA1956230.6292236820182197No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGC1895180.6095868776612614No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAG1853910.5963123335857223No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGTCCGG1614650.5193540729723592No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAG1534590.49360267974028593No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG1438690.4627563318642452No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1400380.45043387527267975No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCCGGG1257380.40443775695908407No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1175100.3779722981140305No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG1094020.3518928206813987No Hit
GATCACCTGATACCATTCCGAACTCAGA1071800.3447457315280554No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGATA996220.3204353355690234No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGC919220.29566819493862573No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGA884390.2844650844430835No Hit
TTAATCAGTGAAATTGACCTTTCAGTG832230.26768775904981673No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGG813680.26172112971613No Hit
GTCGCGGCGTGGGAAATGTGGCGTA800660.25753323139135365No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGAT790870.2543842663683459No Hit
AATGCCTAAAGGAAAGATCCAAAAAG778180.2503025129319856No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAAA773740.24887438170602497No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAG767980.24702167092640043No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGCGTCCGG761570.24495988688171405No Hit
GGAATGCCTAAAGGAAAGATCCAAAA752730.2421164904768736No Hit
CGTCAGCTCACATAGTGACGCAGGCAGTGCGACC740520.23818912960548197No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAAAG714900.2299484264502769No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC695020.22355400105115605No Hit
GTCGCGGCGTGGGAAATGTGGCGTACG659990.21228656032021018No Hit
CAAAAAGTAAGTTTAGATTATAGCCAA655150.2107297686234423No Hit
TTGAACCCCATTCGTGATGGGGATCGGGGATT642410.20663193262823107No Hit
GAATACAAGCTTGGGCTGCAGGTCGACCCG638470.20536462699077954No Hit
AATGCCTAAAGGAAAGATCCAAAAAGA604980.19459252907244165No Hit
CAGCTAACGCGTTAAATGATCCGCCTGAGTA591750.19033708400049149No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCCGGG580970.1868696843122358No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT572210.1840520200015568No Hit
GGAATGCCTAAAGGAAAGATCCAAAAA570430.1834794809064645No Hit
GACGTACGCAGTTTTATCCGGTAAAGCG553780.17812398880911226No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGC528970.1701438231072919No Hit
TTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA497020.15986706800156192No Hit
TAATCCACCTATAACTTCTCTGTTAACCCAAC486340.15643183343100808No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG481050.15473029870458205No Hit
ACGTACGCAGTTTTATCCGGTAAAGC477350.1535401893496149No Hit
CGGAATGCCTAAAGGAAAGATCCAAAA475980.15309952723710002No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC445440.14327630029096566No Hit
CGGAATGCCTAAAGGAAAGATCCAAAAAGA429130.1380301695937996No Hit
AACTGGTTATATATTGACACTAAGGGACG426080.13704913350389422No Hit
GAATGCCTAAAGGAAAGATCCAAAAAG419970.13508384481231334No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAAAGA418710.13467856432927044No Hit
TGGCGGTGCGCCGCGACCGGCTCCGGGACGGC416870.13408672616355705No Hit
CGGAATGCCTAAAGGAAAGATCCAAAAAG395240.12712941120465443No Hit
GGCTGGTCCGAAGGTAGTGAGTTATCT371770.11958025808003839No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAA363190.11682049098122263No Hit
AATGCCTAAAGGAAAGATCCAAAAAGAT355250.11426658063569853No Hit
GACGTACGCAGTTTTATCCGGTAAAGC351550.11307647128073137No Hit
GAATACAAGCTTGGGCTGCAGGTCGAC341020.10968948438673022No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCCGGG332130.10683000542303885No Hit
AATGCCTAAAGGAAAGATCCAAAAAGATA322230.10364565877055915No Hit
CAGCTAACGCGTTAAATGATCCGCCTGAGT320480.10308276921077736No Hit
CGGAATGCCTAAAGGAAAGATCCAAAAA319120.10264532361003269No Hit
ACGTACGCAGTTTTATCCGGTAAAGCG312800.10061248817127795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)