FastQCFastQC Report
Sat 30 Sept 2023
SRR6876906.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6876906.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27474548
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGTGGATATCTCGTAT1059110.3854876884598793TruSeq Adapter, Index 7 (97% over 36bp)
GCCTCACTTAGTTACAGTTTTATGGATAATTGGGATATTCTTTGGTATAG423830.1542627744048783No Hit
GCCTTATGTGATAGATGCCTCTTTAAAATATCTAAGTGCTGGGGTTATGA366150.13326879845302642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)