FastQCFastQC Report
Tue 4 Jul 2023
SRR6876925_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6876925_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12204
Total Bases621.7 kbp
Sequences flagged as poor quality0
Sequence length40-51
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGATGTACACGGAGTCGAGCTCAACCCGCGTTATGGAATTCTCGGGTG270.22123893805309736No Hit
CGTGATGTACACGGAGTCGAGCTCAACCCGCGTCATGGAATTCTCGGGTG180.14749262536873156No Hit
CGTGATGTACACGGAGTCGAGCTCAACCCGCGTACTGGAATTCTCGGGTG160.13110455588331696No Hit
CGTGATGTACACGGAGTCGAGCTCAACCCGCGTGCTGGAATTCTCGGGTG160.13110455588331696No Hit
CGTGATGTACACGGAGTCGAGCTCAACCCGCAACGTACTGGAATTCTCGG140.11471648639790233No Hit
TTGCGCGCCGCTGGTGTAGTGGTATCATGCAAGATTGGCCTGGAATTCTC130.10652245165519501No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)