FastQCFastQC Report
Fri 7 Jul 2023
SRR6893921.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6893921.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21219291
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCGGCCGAGGTGGGATCCCGAGGCGGGGGTAGACAGATCGGAAGAGC400350.18867265640496658No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCTGGGGTAGACAGATCGGAAGAGC343360.16181502011542234No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCGGGTGTAGACAGATCGGAAGAGC332090.15650381532540367No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCTGGTGTAGACAGATCGGAAGAGC319710.1506695016341498No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCGGTGGTAGACAGATCGGAAGAGC312240.147149120109621No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCGGTTGTAGACAGATCGGAAGAGC254130.11976366222603763No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCGTGTGTAGACAGATCGGAAGAGC237180.11177564792339198No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCGGTAGTAGACAGATCGGAAGAGC232340.10949470460629433No Hit
GAGACCGCCGAGGGCGCACCACCGGCCCGTCTCGATCGGTAGACAGATCG227630.10727502629564768No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCGGACGTAGACAGATCGGAAGAGC220640.10398085402570707No Hit
GAGAGAGGGCGCACCACCGGCCCGTCTCGATCTGTAGACAGATCGGAAGA218540.10299118853688372No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCGGATGTAGACAGATCGGAAGAGC214910.1012804810490605No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)