FastQCFastQC Report
Fri 7 Jul 2023
SRR6916500.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6916500.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38434502
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length23-63
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC2532550.6589261908480042No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG1392290.36225004294318686No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCG1226980.31923920856318105No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC1208310.3143815939126777No Hit
CCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG1183310.30787702153653507No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1128280.2935591568221698No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC1122420.292034485057202No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1057770.27521366089249705No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1036890.2697810420439427No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG957030.24900283604559256No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT879600.22885687448220352No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT780250.20300770385941255No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC750060.1951527822579827No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT742790.19326125261100038No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGC716310.18637160955019008No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGCG614940.15999686947940683No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC613040.15950252197881998No Hit
TTCCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG591970.15402046838020694No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC591260.15383573852472449No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC584040.15195721802249448No Hit
GGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC569700.14822619530753905No Hit
CTTCTGGCGCCAAGCGTCCGTCCCGCG558250.1452471011592657No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGC558190.14523149018556294No Hit
CCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT548500.14271031793257005No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC544510.1416721881813377No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC540000.14049876332468156No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT539590.1403920883377128No Hit
CCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC511390.13305493069742388No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG503320.13095525473440503No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG482490.12553564503060297No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT471180.12259297648763604No Hit
CGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG458230.11922360799679413No Hit
ACTAATTTTTTGAGGCCTTGCTTTAGCAAGGCTA451400.11744655882363196No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCG435110.11320817946333739No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCC434620.113080689844765No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC426200.11088994986848015No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT419630.10918054824802985No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT413390.10755700698294465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)