FastQCFastQC Report
Fri 7 Jul 2023
SRR6916502.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6916502.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28682589
Total Bases952.5 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC3181611.1092478437005808No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC1974050.6882398238178569No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1252000.43650173978367157No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT1009290.351882460819698No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC976320.3403876825763532No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG856460.29859926521974706No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT803060.2799816990021368No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC760200.26503883592935074No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT731490.25502927926066926No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT615590.21462149041008816No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC596740.20804955926398416No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT584740.20386583651845375No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT578830.20180535306628003No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG571000.19907547397482145No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT558110.19458145845899755No Hit
CCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG503440.17552111491748532No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC486840.16973363178616827No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC480960.16768360764085835No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG465010.1621227428249242No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT447480.15601102118082855No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG440790.15367859575019535No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC432470.15077788131329428No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT426090.14855353538692062No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT417800.14566328025688335No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC414790.14461386313487948No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC407660.1421280345369102No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT404790.14112742751360416No Hit
ACCTCTAGCATTACAAGTATTAGAGGC389200.13569207438003592No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCG383490.1337013196402877No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG380290.1325856602414796No Hit
CGCGGGGCCTCGCTCCACCCCCCCATCGCCTCT379260.13222655737248826No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC374420.13053912253179095No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC370210.12907133313523408No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC369090.12868085234565121No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC361910.12617759156957553No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAAC344650.12016000368725431No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC340250.11862597201389316No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC336590.1173499365765064No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC327760.11427141392292028No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT322850.11255957403287409No Hit
CCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT315360.10994823375253887No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC303810.10592140060996585No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC301300.10504630526902575No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG287630.10028034777474237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)