FastQCFastQC Report
Fri 7 Jul 2023
SRR6916503.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6916503.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32881687
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length20-60
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC2016920.6133870199542986No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC1169000.35551703901323556No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1021850.3107656854710648No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT903640.27481558351917895No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC861850.262106381585592No Hit
AGAGCCACCTTACAAATAAGCGCTCTC846240.25735905825026556No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT713170.2168897234500164No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT640100.19466762760681958No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT591960.18002725955027793No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT590590.17961061426075858No Hit
ACCTCTAGCATTACAAGTATTAGAGGC588200.17888376590896934No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC573790.17450138735278395No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG549250.16703826661934956No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG504780.15351402134568096No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC498690.15166192659154015No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC488750.14863896733765514No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC484540.14735861940416864No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC483080.14691460325621372No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT469910.14290933430514074No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT466120.1417567170443536No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT456810.13892535379951765No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT451390.13727701988039726No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC425740.1294763252262574No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC425550.1294185423028934No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAAC420180.12778541441623723No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC413690.12581167140238272No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC379190.11531950900207766No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC377450.11479033907232314No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC375970.11434024051138253No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC375840.11430070482697557No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT359140.10922188998392936No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG358660.10907591207227293No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC351710.10696227355974772No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT346680.10543254669384816No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC333520.10143031894926803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)