FastQCFastQC Report
Fri 7 Jul 2023
SRR6916506.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6916506.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32529614
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length20-60
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC2088440.6420119218137663No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC1460910.4491015479003224No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1391570.4277855863890669No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC1161250.35698240993575886No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1136670.34942621821457825No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT933880.2870860994538699No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT843260.25922840646064843No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC761310.23403597718681815No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT734980.2259418141266601No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC733550.22550221468966708No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG664540.20428769920233297No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT633050.19460728922267567No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT619380.19040496453477745No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT604070.1856984838492089No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT603060.1853879975335705No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG595740.1831377402756762No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG592590.18216939186551676No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG582380.1790307133678254No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT581160.17865567049150965No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC541830.16656514891323335No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG512500.15754874927197107No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC482260.14825260453444053No Hit
TGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT473680.14561500791248244No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT467590.1437428676528409No Hit
CCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG462840.1422826597327592No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC447060.137431695316151No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC414270.12735164948468186No Hit
AATAAGTGGGAGGCCCCCGGCGCCCGGCCCCG407650.12531658076237853No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT407340.12522128298233112No Hit
ACCTCTAGCATTACAAGTATTAGAGGC404450.12433286174253406No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC393160.12086217807564517No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC390610.12007827698170659No Hit
CCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT375960.11557468834398096No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT372550.11452641276345916No Hit
ACCGCCCGTCCCCGCCCCTTGCCTCTCGGCG371580.1142282229355688No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAAC371040.11406222035097004No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC367050.11283564569810142No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC366100.1125436041140851No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC365700.11242063923660453No Hit
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCC358000.11005356534510369No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC357610.10993367458956013No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG347340.1067765513602467No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC343470.10558686617062225No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC342040.10514726673362924No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT338870.10417277007959579No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT337650.10379772720328007No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC330830.10170117604223645No Hit
CCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT326790.10045923077968279No Hit
CCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGTC326500.10037008124350938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)