FastQCFastQC Report
Fri 7 Jul 2023
SRR6916507.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6916507.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32817923
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length20-60
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC2580840.7864117421446812No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC1440490.43893393253436547No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1200860.3659159051595069No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT867290.2642732753075202No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG790670.24092627677869805No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC777390.23687970746960435No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT765300.2331957448982984No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG735980.2242616024176789No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT729680.2223419196882143No Hit
AGAGCCACCTTACAAATAAGCGCTCTC694560.21164045025030986No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT618940.18859816326584716No Hit
ACCTCTAGCATTACAAGTATTAGAGGC603930.18402444298501158No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT597720.1821321842945393No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC595560.18147400735872285No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC581160.17708616111994657No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT533700.16262455122464636No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT524450.1598059694393213No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG505050.1538945654787477No Hit
CCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG503080.15329428373635956No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC499540.15221560486932706No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT460770.14040193829451061No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC442900.13495674299680696No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC436900.13312847373065018No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT429810.13096806888114157No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG404680.1233106677713882No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT396730.12088821099373045No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC396410.12079070329953544No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC385780.11755161958299433No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT385180.11736879265637865No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC384070.11703056284213964No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG379900.11575991570216067No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC361970.11029643771179548No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC353590.10774295497006316No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC348020.10604571166798094No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT340740.10382741162504402No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT334060.10179193850872281No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC332200.1012251750362142No Hit
ACTAATTTTTTGAGGCCTTGCTTTAGCAAGGCTA330230.10062489329382607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)