FastQCFastQC Report
Wed 5 Jul 2023
SRR6939924_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6939924_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10078984
Total Bases300.7 Mbp
Sequences flagged as poor quality0
Sequence length25-35
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT5917895.8715144304227485No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAA1504191.4924024088142216No Hit
CGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT358440.3556310834504748No Hit
TGTTGAACCCCATTCGTGATGGGGATCGGGGATT300710.29835348483537627No Hit
TCGCCTGGATACCGCAGCTAGGAATAATGGAAT244400.24248475838437683No Hit
GGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT236560.23470619657695654No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCG215410.213721938639847No Hit
TCCGCCTGGATACCGCAGCTAGGAATAATGGAAT202670.20108177570278907No Hit
TGCCGCCTGGATACCGCAGCTAGGAAT200370.1987997996623469No Hit
TTGCCGCCTGGATACCGCAGCTAGGAATAATGGAA157880.1566427727239174No Hit
TAACGATGCCGACCGGCGATGCGGCGGCG146140.14499477328270388No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGA141260.1401530154229831No Hit
TCAACTTCTTAGAGGGACAAGTGGCGTT115070.11416825346681769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)