FastQCFastQC Report
Wed 5 Jul 2023
SRR6939926_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6939926_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22052489
Total Bases667.2 Mbp
Sequences flagged as poor quality0
Sequence length25-35
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCAGCTCAAAACGCTTAGCCTAGCCACAC1841500.835053131644233No Hit
CGATCAAAAGGGACAAGCATCAAGCACGCAGC1545740.7009367514025288No Hit
AAATGCAGCTCAAAACGCTTAGCCTAGCCACAC1201700.544927150853584No Hit
ACGATCAAAAGGGACAAGCATCAAGCACGCAGC1138910.5164541744018102No Hit
AATGCAGCTCAAAACGCTTAGCCTAGCCACAC801010.36322884006426664No Hit
AAGGGACAAGCATCAAGCACGCAGC738940.33508235737018166No Hit
TCATTATTACCCTCACTGTCAACCCAACA546640.24788131625414256No Hit
TAGGGACAAGCATCAAGCACGCAGC448930.20357339255446402No Hit
TCATTATTACCCTCACTGTCAACCCAACAC405810.1840200441773262No Hit
AAAAAGGGACAAGCATCAAGCACGCAGC346740.15723395214027766No Hit
ATAGGTTTGGTCCTAGCCTTTCTATT341290.15476257577999472No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTC313140.141997576781469No Hit
TAGCCTGGTGATAGCTGGTTGTCCAAGATAGAAT311860.14141714343446674No Hit
ATGCAGCTCAAAACGCTTAGCCTAGCCACACC306650.1390545983267467No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCT264120.11976879344549271No Hit
AAAAGGGACAAGCATCAAGCACGCAGC262570.11906592493935719No Hit
TGATCAAAAGGGACAAGCATCAAGCACGCAGC255430.11582819517561033No Hit
CCGAGCCTGGTGATAGCTGGTTGTCCAAGA243770.11054081015526183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)