FastQCFastQC Report
Wed 5 Jul 2023
SRR6939930_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6939930_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22844062
Total Bases690.6 Mbp
Sequences flagged as poor quality0
Sequence length25-35
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACCTCTAGCATCACCAGTATTAGAGGC8163103.5734012628752274No Hit
ACCTCTAGCATCACCAGTATTAGAGGC4534991.9851942268410934No Hit
TCACCTCTAGCATCACCAGTATTAGAGGCA1474110.6452924177845429No Hit
CCACCTCTAGCATCACCAGTATTAGAGGC1195590.5233701431908213No Hit
AATAAGGCCTACTTCACAAAGCGCCTTCC1151670.5041441403897433No Hit
TATGCTAAGACTTCACCAGTCAAAGCGA1074350.4702972702490476No Hit
GCACCTCTAGCATCACCAGTATTAGAGGC1031290.45144773289443885No Hit
AACATCACCTCTAGCATCACCAGTATTAGAGGC949750.4157535555629292No Hit
TCGACTGCATAATTTGTGGTAGTGGGG943150.41286440213653774No Hit
ATCACCTCTAGCATCACCAGTATTAGAGGC800710.35051121818877923No Hit
CATGCTAAGACTTCACCAGTCAAAGCGA781190.34196632805496674No Hit
ATCACCTCTAGCATCACCAGTATTAGAGGCA721780.3159595697122517No Hit
GGTCGCTGGTTCGTTTCCGGCTCGAAGGA690180.30212665330710453No Hit
AACATCACCTCTAGCATCACCAGTATTAGAGGCA668530.292649354567502No Hit
ACCTCTAGCATCACCAGTATTAGAGGCA640580.28041422755725315No Hit
AAATAAGGCCTACTTCACAAAGCGCCTTCC518230.22685545153922274No Hit
TCCTTAGGTCGCTGGTTCGTTTCCGGCTCGAAGGA478190.20932792075244763No Hit
AGAAATAAGGCCTACTTCACAAAGCGCCTTCCC470100.20578651905252227No Hit
AACTTGACCAACGGAACAAGTTACCCTAGGGATA429320.18793505288157597No Hit
AAAACATCACCTCTAGCATCACCAGTATTAGAGGC426960.18690196165638143No Hit
TAAACATCACCTCTAGCATCACCAGTATTAGAGGC397590.17404522890893923No Hit
ACGATTAAAGTCCTACGTGATCTGAGT390340.17087153764510007No Hit
CACCTCTAGCATCACCAGTATTAGAGGC363620.159174843773406No Hit
AACTTGACCAACGGAACAAGTTACCCTAGGGATAA358810.15706926377629338No Hit
TGAAATAAGGCCTACTTCACAAAGCGCCTTCCC337440.147714535182053No Hit
TCATTATTACCCTCACTGTCAACCCAACA333030.14578405539260048No Hit
ACGATTAAAGTCCTACGTGATCTGAGTT329160.14408996088348913No Hit
GAGAAATAAGGCCTACTTCACAAAGCGCCTTCCC328450.14377915801489244No Hit
AGTACATGCTAAGACTTCACCAGTCAAAGCGA292950.12823901458505935No Hit
TCCTTAGGTCGCTGGTTCGTTTCCGGCTCGAAGG291280.12750797121807847No Hit
TGAAATAAGGCCTACTTCACAAAGCGCCTTCC267080.11691440865464295No Hit
CTCGACTGCATAATTTGTGGTAGTGGGG252310.11044883348679407No Hit
AATAAGGCCTACTTCACAAAGCGCCTTCCC250170.10951204737581258No Hit
TCATGCTAAGACTTCACCAGTCAAAGCGA248030.1085752612648311No Hit
TCATTATTACCCTCACTGTCAACCCAACAC244320.10695120683878376No Hit
AGTACATGCTAAGACTTCACCAGTCAAAGCGAACT235090.10291076954702714No Hit
TTCACCTCTAGCATCACCAGTATTAGAGGC230980.10111161491331971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)