FastQCFastQC Report
Wed 5 Jul 2023
SRR6939934_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6939934_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27639368
Total Bases847.5 Mbp
Sequences flagged as poor quality0
Sequence length17-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAACGATGCCGACCGGCGATGCGGCGGCGTT26713669.66507627815513No Hit
CAAACGATGCCGACCGGCGATGCGGCGGCGTT4653681.6837143309499696No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGT3073501.1120008243314392No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA2438720.8823356597734073No Hit
TATAAACGATGCCGACCGGCGATGCGGCGGCGTT1999650.7234789160157352No Hit
ACTTACTGGGAATTCCTCGTTCATGGGGAAT1790700.647880226494325No Hit
ATGACCCGCACTTACTGGGAATTCCTCGTTC1562010.5651395502241585No Hit
TAATCTCGGGTGGCTGAACGCCACTTGTCCCTCT1353000.48951915253633876No Hit
TATAAACGATGCCGACCGGCGATGCGGCGGCG1110400.40174579968688146No Hit
TAGCCCCGGACATCTAAGGGCATCACAGACCTGTT1105760.40006703481787287No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTC1063050.384614438361977No Hit
TAGTGTAGCGCGCGTGCAGCCCCGGACATCT1023220.37020383389374173No Hit
ACTGGGAATTCCTCGTTCATGGGGAATAATTGC911290.3297072494566446No Hit
AAAAACGATGCCGACCGGCGATGCGGCGGCGTT866910.3136504423690151No Hit
GAAACGATGCCGACCGGCGATGCGGCGGCGTT816470.2954011104740166No Hit
AATTATTCCCCATGAACGAGGAATTCCCAGT727660.26326940616008293No Hit
TAGAGTCTCGTTCGTTATCGGAATTAACCAGAC669160.24210394391072906No Hit
AAATGAAAACATTCTTGGCAAATGCTTTCGCT632010.2286629708754556No Hit
TAGTGTAGCGCGCGTGCAGCCCCGGAC590690.2137132802747154No Hit
CAAACGATGCCGACCGGCGATGCGGCGGCGT576710.20865527750128007No Hit
TACACGCTGAGCCAGTCAGTGTAGCGCGCGTGC536320.19404206347988853No Hit
TAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCT535730.19382859984352754No Hit
TATGCACCACCACCCACGGAATCGAGAAAGAGCT532790.19276489968945743No Hit
CAAGGGCATCACAGACCTGTTATTGCTC497330.17993537334138754No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCG475700.17210957935072901No Hit
AATAAACGATGCCGACCGGCGATGCGGCGGCGTT429270.1553110765774384No Hit
TAGAGTCTCGTTCGTTATCGGAATTAACC406040.14690639814919068No Hit
CAAACGATGCCGACCGGCGATGCGGCGGCGTTA399650.14459447842656895No Hit
TATAAACGATGCCGACCGGCGATGCGGCGGCGT372910.13491987226336002No Hit
TAGACAAATCGCTCCACCAACTAAGAACGGCC356240.12888862002922788No Hit
CAAGGGCATCACAGACCTGTTATTGCTCAAT348830.12620766147764306No Hit
TCGTCTTGCGCCGGTCCAAGAATTTCACCTCT348790.12619318936670332No Hit
AAAGGGCATCACAGACCTGTTATTGCTCAAT331630.1199846537735595No Hit
TACCCACGGAATCGAGAAAGAGCTATCAATCTGTC327720.118570004929201No Hit
AAAGGGCATCACAGACCTGTTATTGCTC325410.11773424052243162No Hit
TAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC311370.11265452958258669No Hit
TACCCACGGAATCGAGAAAGAGCTATC309610.1120177567012386No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTC283490.10256746825759545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)