FastQCFastQC Report
Tue 4 Jul 2023
SRR6939942_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6939942_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18867459
Total Bases544.2 Mbp
Sequences flagged as poor quality0
Sequence length25-35
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTCTAGCATCACCAGTATTAGAGGC4279592.2682386642525634No Hit
TATGCTAAGACTTCACCAGTCAAAGCGA1095190.5804650218134833No Hit
CCTCTAGCATCACCAGTATTAGAGGC1006450.5334316613593807No Hit
TATTGATCATCGACACTTCGAACGCA913570.4842040467664459No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCT791330.41941524823241966No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCC765690.40582571293781533No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT696040.3689103021238843No Hit
TGCTAAGACTTCACCAGTCAAAGCGA684710.362905253961331No Hit
ACGATTAAAGTCCTACGTGATCTGAGT520210.2757181027927502No Hit
TCCTCTAGCATCACCAGTATTAGAGGC508890.269718354760967No Hit
AGAAATAAGGCCTACTTCACAAAGCGCCTTCCC494840.2622716710289393No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGC385360.2042458393575945No Hit
CATGCTAAGACTTCACCAGTCAAAGCGA372400.19737686987951053No Hit
ATGCTAAGACTTCACCAGTCAAAGCGA349370.18517066871590923No Hit
TCACCTCTAGCATCACCAGTATTAGAGGC296170.1569739730188363No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC280470.1486527677097377No Hit
TATTGATCATCGACACTTCGAACGCAC255910.13563564653830704No Hit
TCATTATTACCCTCACTGTCAACCCAACA249620.13230186428389748No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGC239850.1271236365214839No Hit
ACCTCTAGCATCACCAGTATTAGAGG233640.12383225531323536No Hit
CTCTAGCATCACCAGTATTAGAGGC232520.12323864066698118No Hit
TATGCTAAGACTTCACCAGTCAAAGCG226920.12027056743571035No Hit
AGTACATGCTAAGACTTCACCAGTCAAAGCGA218180.11563825314261979No Hit
TGAAATAAGGCCTACTTCACAAAGCGCCTTCCC205130.10872158248760472No Hit
CCTCTAGCATCACCAGTATTAGAGG198850.10539310036396528No Hit
ACGATTAAAGTCCTACGTGATCTGAGTT198630.1052764974870225No Hit
TGCTAAGACTTCACCAGTCAAAGCG196430.10411046871759468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)