FastQCFastQC Report
Wed 5 Jul 2023
SRR6939944_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6939944_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8641428
Total Bases262.6 Mbp
Sequences flagged as poor quality0
Sequence length25-35
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTACATGCTAAGACTTCACCAGTCAAAGCGAACT335160.38785256325690615No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCGT234320.2711588871654083No Hit
AGTACATGCTAAGACTTCACCAGTCAAAGCGA227920.2637527038355235No Hit
ACGATCAAAAGGGACAAGCATCAAGCACGCAGC212600.24602415248961168No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT205880.2382476599932326No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGT198210.22937181215882374No Hit
AGTACATGCTAAGACTTCACCAGTCAAAGCGAA171850.1988675945688606No Hit
AGAAATAAGGCCTACTTCACAAAGCGCCTTCCC155880.18038685272850738No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC146600.16964788690017438No Hit
GAGAAATAAGGCCTACTTCACAAAGCGCCTTCCC130420.15092412966930926No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC109960.1272474873365837No Hit
AGTTCAACTTTAAATTTGCCCACAGAACCC99940.1156521815607328No Hit
TGAAATAAGGCCTACTTCACAAAGCGCCTTCCC98740.11426352218637938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)