FastQCFastQC Report
Wed 5 Jul 2023
SRR6939952_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6939952_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8590798
Total Bases263.9 Mbp
Sequences flagged as poor quality0
Sequence length25-35
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGATCGTATAGTGGTTAGTACTCTGCGT832880.9695024839368823No Hit
CGATCAAAAGGGACAAGCATCAAGCACGCAGC525930.6122015673049233No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT370640.4314383832561306No Hit
CAAAGCACCCAACTTACACTTAGGAGATT311800.36294649228162507No Hit
TCGTGATCGTATAGTGGTTAGTACTCTGCGT275470.3206570565388687No Hit
ACACAAAGCACCCAACTTACACTTAGGAGATT265050.3085277991637098No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGT184400.21464827830895336No Hit
TAGCCTGGTGATAGCTGGTTGTCCAAGATAGAAT162610.18928392915303097No Hit
TACGATCAAAAGGGACAAGCATCAAGCACGCAGC134710.1568073187147457No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCG125800.14643575602639008No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC113150.1317106978886013No Hit
GTGATCGTATAGTGGTTAGTACTCTGCGT109010.12689158795259767No Hit
TAGTTCAACTTTAAATTTGCCCACAGAACCC100940.11749781568603987No Hit
TCAAATAAAGTATAGGCGATAGAAATTGAAACC100090.11650838490207778No Hit
TAGCCTGGTGATAGCTGGTTGTCCAAGATAGAA99780.11614753367498573No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCGTT94980.11056015983614095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)