FastQCFastQC Report
Wed 5 Jul 2023
SRR6939957_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6939957_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10942538
Total Bases338.7 Mbp
Sequences flagged as poor quality0
Sequence length25-35
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGATCGTATAGTGGTTAGTACTCTGCGT3027262.7665062712142285No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT2797222.556280818947122No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCG1103261.0082304489141367No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGT1009730.9227566767417211No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGG995930.9101453428811487No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG981550.8970039674525233No Hit
TCGTGATCGTATAGTGGTTAGTACTCTGCGT960210.8775020932072615No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGA940120.8591425499276311No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC806560.7370867709118305No Hit
ATCGTATAGTGGTTAGTACTCTGCGT584900.5345195054383179No Hit
CGTGATCGTATAGTGGTTAGTACTCTGC584710.5343458711315419No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGA550330.5029272002528116No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG501040.45788280561602807No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG458670.4191623552049808No Hit
TCGACTGCATAATTTGTGGTAGTGGGG449020.41034356015030515No Hit
TTGGTCTAGGGGTATGATTCTCGCTT428530.3916184709616727No Hit
GTGATCGTATAGTGGTTAGTACTCTGCGT395290.36124160592359833No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC395010.3609857237872969No Hit
CGCAGCAACCTCGGTTCGTATCCGAGTCACGG368620.3368688324408835No Hit
TCGTGATCGTATAGTGGTTAGTACTCTGCG363660.33233606316925746No Hit
CTCGACTGCATAATTTGTGGTAGTGGGG359140.3282053943975337No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGG323460.2955986993145466No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGG257880.23566744753365262No Hit
CGCAGCAACCTCGGTTCGAATCCGAGTCACGG257170.2350186035451739No Hit
CGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGA234360.21417334808432925No Hit
ATCGTATAGTGGTTAGTACTCTGCG233200.21311326494822314No Hit
CGCAGCAACCTCGGTTCGTATCCGAGTCACGGC226100.20662482506343594No Hit
CCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGG206770.18895981901090952No Hit
CCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGA196780.17983030993358212No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA186650.17057285978810402No Hit
TCGTGATCGTATAGTGGTTAGTACTCTGC167060.15267024889472625No Hit
GCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGA159150.14544157854420975No Hit
CGCCGCGGCCCGGGTTCGATTCCCGGTCAGGG157980.14437235676037863No Hit
TGGCCGTGATCGTATAGTGGTTAGTACTCTGC151720.1386515632844958No Hit
TGCCGTGATCGTATAGTGGTTAGTACTCTGCGT150230.13728990477346298No Hit
TTTGGTCTAGGGGTATGATTCTCGCTT149210.13635776270550762No Hit
CGCAGCAACCTCGGTTCGAATCCGAGTCACGGC147470.1347676380013485No Hit
GCAGCAACCTCGGTTCGTATCCGAGTCACGG145450.13292163116088793No Hit
TGGCCGTGATCGTATAGTGGTTAGTACTCTGCGT143180.130847158127301No Hit
GTGATCGTATAGTGGTTAGTACTCTGCG136500.12474254144696596No Hit
CGCAGCAACCTCGGTTCGAATCCGAGTCACG133200.12172678769769864No Hit
CGCAGCAACCTCGGTTCGTATCCGAGTCACG132800.12136124178869655No Hit
ATCACCTCTAGCATCACCAGTATTAGAGGC126180.11531145699471183No Hit
TGCAGCAACCTCGGTTCGAATCCGAGTCACGG123150.11254244673402093No Hit
TCGCAGCAACCTCGGTTCGAATCCGAGTCACGG121270.11082438096171109No Hit
CGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGG121250.11080610366626097No Hit
CGCAGCAACCTCGGTTCGGATCCGAGTCACGG120180.10982826835968036No Hit
CCGTGATCGTATAGTGGTTAGTACTCTG117800.10765327020111788No Hit
CCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGA114150.10431766378147372No Hit
GAGAAATAAGGCCTACTTCACAAAGCGCCTTCCC110270.1007718684641534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)