FastQCFastQC Report
Tue 4 Jul 2023
SRR6939961_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6939961_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7985939
Total Bases244.4 Mbp
Sequences flagged as poor quality0
Sequence length25-35
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGATCGTATAGTGGTTAGTACTCTGCGT626080.783977939225431No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT440810.5519826785553958No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCG208110.2605955292170401No Hit
AGAAATAAGGCCTACTTCACAAAGCGCCTTCCC202140.2531198898463913No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGT195550.24486788591798658No Hit
AGTACATGCTAAGACTTCACCAGTCAAAGCGA173950.21782034648649332No Hit
TCGTGATCGTATAGTGGTTAGTACTCTGCGT170250.2131872031579505No Hit
TGAAATAAGGCCTACTTCACAAAGCGCCTTCCC164690.2062249661561402No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG150090.1879428330218901No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC149270.18691602828421305No Hit
GAGAAATAAGGCCTACTTCACAAAGCGCCTTCCC148480.18592678957352415No Hit
CGTGATCGTATAGTGGTTAGTACTCTGC145640.18237053901864264No Hit
ATCGTATAGTGGTTAGTACTCTGCGT134070.16788257461019926No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC132540.1659667072338018No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG111510.13963292231508403No Hit
AGTACATGCTAAGACTTCACCAGTCAAAGCGAA101140.12664759898616806No Hit
ATCACCTCTAGCATCACCAGTATTAGAGGC94010.11771940657197608No Hit
AACTTTGCAAGGAGAGCCAAAGCTAAGACC84200.10543531574683954No Hit
TGAAATAAGGCCTACTTCACAAAGCGCCTTCC83680.10478417127904432No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)