FastQCFastQC Report
Mon 10 Jul 2023
SRR7124016_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7124016_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47035597
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length35-75
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTAAACTTTAGTCACTGGGCAGGCAGTGCCTCTAATACTTGTAATGCTA2225460.4731437766166761No Hit
GTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGC2188560.4652986545488091No Hit
GTGATTATTGCCTATAGTCTGATTAACTAACAATGGTTATCCGAGTTGTT2045890.43496630860239743No Hit
GTAAATTATGGAATTAATTGAAATTTTATGTTGAGCTTGAACGCTTTCTT1676640.35646193669020504No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1270820.2701826023383949No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1225660.26058136351495653No Hit
GCTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTT1207200.25665667643168216No Hit
CTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTT1169050.24854579819620445No Hit
GCTACCTTTGCACGGTCAGGATACCGCGGCCGTTAAACTTTAGTCACTGG1132180.24070705427636008No Hit
ATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTATTTGTAA1129940.2402308192240018No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1097350.23330202442205633No Hit
CTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTATAA1095680.23294697418212848No Hit
CTTTCATCTTTCCCTTGCGGTACTAGTTCTATAGCTCCTAGATGTACGAA1032340.21948057765696052No Hit
GTCCTTTCGTACTGGGAGAAATCGTAAATAGATAGAAACCGACCTGGATT985290.20947751550809487No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT972080.2066690043287853No Hit
CCTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGAACAAGTGATTATG907050.1928433054650077No Hit
CCCCAACCGAAATTTCAAACTTATACTATAGTTTTTGGGCCATTAGGTTT899990.19134231463034262No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT884230.1879916608691073No Hit
GTGTAAATTATGGAATTAATTGAAATTTTATGTTGAGCTTGAACGCTTTC875200.1860718383142878No Hit
CTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGAACAAGTGATTATGC851840.18110538705397955No Hit
GCCACATAGACGAGTTGATTCATAAAATTGTTTTTAGGTAGCTCGTTTGG822690.1749079532252987No Hit
CCGAGTTGTTATACGCGTATGCCTGGAGAATTGGAATTCTTGTTACTCAT821760.17471023063659635No Hit
CGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTA813920.17304340795334222No Hit
GCTTGTTCTTACTTTTAATTAGTCTTTCATCTTTCCCTTGCGGTACTAGT766370.1629340433374323No Hit
CTCTATTTCTCTTGTCCTTTCGTACTGGGAGAAATCGTAAATAGATAGAA761420.16188164891369403No Hit
CTTTAATCGTTGAACAAACGAACCATTAATAGCTTCTACACCATTGGGAT739210.1571596933275876No Hit
GTTCATTATGCAAAAGGTACAAGGTTTAATCTTTGCTTGTTCTTACTTTT735510.15637305507146002No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA726150.15438307288839132No Hit
CTATAATCTAAACTTACTTTTTGATTTTGTTGTTTTTTTAGCAAGTTTAA706210.15014373050266588No Hit
GGCTGCTTTTAGGCCTACAATGGTTAAAAGCTGTTTTGTTAATTATTCAC702630.14938260483862892No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT695610.1478901182013274No Hit
GTGTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGC674250.14334887680919622No Hit
CGTTGATCAAAATATATCTGGGTCAATAAGATATGTTGATTTTACTTTGA669470.14233262522425302No Hit
GGTGTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAG663950.1411590459880843No Hit
CCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC644630.13705151866149376No Hit
GTAGGACTTTAATCGTTGAACAAACGAACCATTAATAGCTTCTACACCAT605250.12867913635708716No Hit
GTGCCAGTTACCTTGTTTTTTTTTGGTCTTTTTGTTATTTTGTCTTTTTT598140.12716751527571765No Hit
CGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTTCTAGTTAGTTCA590620.12556872617137188No Hit
GTCCTGATCCAACATCGAGGTCGTAAACCCTAATTGTCGATATGAACTCT577340.12274533264667609No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG568100.120780863055698No Hit
GTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTTCTA561740.1194286956748949No Hit
GTCGATATGAACTCTTAAATAGGATTGCGCTGTTATCCCTAGGGTAACTT560410.11914593111255714No Hit
CTGGCAAATAGTTTTGTTAAATTTAATTATTTAGGTTTATGGCTAAGCAT549280.11677963819615174No Hit
AGCTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTT524830.111581447557687No Hit
CTTACTTTTAATTAGTCTTTCATCTTTCCCTTGCGGTACTAGTTCTATAG514580.1094022469832795No Hit
GTTGGATTTTAATTCTATTTATTTATTTATAGTTGACACGTTTTACGCCG508880.10819039885897484No Hit
GGGCCATTAGGTTTAATAAATTAAATAGATAAGTTATATAATTTAAGCTC508350.1080777182439079No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG502240.10677870209662695No Hit
CTCGTCTTATTATTATATTTCAGCCTCTTCACTGAAAGGTCAATTTCACT486230.10337489710186946No Hit
GCGCTTATTTGTAAGGTGGCTCTATTTCTCTTGTCCTTTCGTACTGGGAG485540.10322819969734837No Hit
GTTTTTGGTAAACAGGCGGGGTTCTTGTTTGCCGAGTTCCTTTTATCTTT481280.1023225026781312No Hit
CCCTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGAACAAGTGATTAT478210.10166980553047938No Hit
GGTGGCTCTATTTCTCTTGTCCTTTCGTACTGGGAGAAATCGTAAATAGA475790.10115530158998515No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG475640.10112341084987184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)