FastQCFastQC Report
Mon 10 Jul 2023
SRR7124017_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7124017_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45936289
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length35-75
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGC2724540.5931127784397212No Hit
GTGATTATTGCCTATAGTCTGATTAACTAACAATGGTTATCCGAGTTGTT2399590.522373498651578No Hit
GTAAATTATGGAATTAATTGAAATTTTATGTTGAGCTTGAACGCTTTCTT2136290.4650549808235489No Hit
ATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTATTTGTAA1756990.38248409661477006No Hit
GTTAAACTTTAGTCACTGGGCAGGCAGTGCCTCTAATACTTGTAATGCTA1477670.32167813991243394No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1352620.29445565356835857No Hit
GTGCCAGTTACCTTGTTTTTTTTTGGTCTTTTTGTTATTTTGTCTTTTTT1203710.2620390166911393No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1161790.25291333394388915No Hit
GCTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTT1088100.23687155050770425No Hit
GCTACCTTTGCACGGTCAGGATACCGCGGCCGTTAAACTTTAGTCACTGG968130.2107549436568548No Hit
CCGAGTTGTTATACGCGTATGCCTGGAGAATTGGAATTCTTGTTACTCAT903980.19678994966267302No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT825880.17978814091839243No Hit
CTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTT811620.17668384139606924No Hit
CGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTA810060.1763442406068109No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT796900.17347940317947755No Hit
GCTTGTTCTTACTTTTAATTAGTCTTTCATCTTTCCCTTGCGGTACTAGT791730.17235393133302518No Hit
GCCACATAGACGAGTTGATTCATAAAATTGTTTTTAGGTAGCTCGTTTGG776630.1690667698472552No Hit
CTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTATAA730330.15898759257631803No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG728260.15853696845210982No Hit
CTTTCATCTTTCCCTTGCGGTACTAGTTCTATAGCTCCTAGATGTACGAA705860.15366064942686164No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT696350.15159039076926742No Hit
GCCAGTTACCTTGTTTTTTTTTGGTCTTTTTGTTATTTTGTCTTTTTTTT673830.14668794860638396No Hit
GCGCTTATTTGTAAGGTGGCTCTATTTCTCTTGTCCTTTCGTACTGGGAG666730.14514232962963117No Hit
GTGTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGC656630.14294363221199693No Hit
GGTGTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAG619000.13475185163520717No Hit
CTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGAACAAGTGATTATGC613730.13360461050739209No Hit
GTTCATTATGCAAAAGGTACAAGGTTTAATCTTTGCTTGTTCTTACTTTT608940.13256186193011804No Hit
GGGGTCTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCG595710.12968178600583083No Hit
CCCCAACCGAAATTTCAAACTTATACTATAGTTTTTGGGCCATTAGGTTT556580.12116346620860034No Hit
GGCTGCTTTTAGGCCTACAATGGTTAAAAGCTGTTTTGTTAATTATTCAC548720.11945240069349095No Hit
GTCCTTTCGTACTGGGAGAAATCGTAAATAGATAGAAACCGACCTGGATT542440.11808528982391242No Hit
GTCGATATGAACTCTTAAATAGGATTGCGCTGTTATCCCTAGGGTAACTT537180.11694022562423359No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG513810.11185274456976706No Hit
CCTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGAACAAGTGATTATG503940.10970411649926706No Hit
TGTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCG485570.10570509951293627No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG483600.1052762446700908No Hit
GGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTATAAAG474810.1033627248383081No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA474060.10319945522808775No Hit
GTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTAT468110.10190418298700621No Hit
CGTTGATCAAAATATATCTGGGTCAATAAGATATGTTGATTTTACTTTGA463430.10088538061923114No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT462910.100772180356145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)