FastQCFastQC Report
Fri 7 Jul 2023
SRR7124018_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7124018_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54190764
Total Bases4 Gbp
Sequences flagged as poor quality0
Sequence length35-75
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGC2441770.45058785294113957No Hit
GTTAAACTTTAGTCACTGGGCAGGCAGTGCCTCTAATACTTGTAATGCTA2347990.43328232095048524No Hit
GTGATTATTGCCTATAGTCTGATTAACTAACAATGGTTATCCGAGTTGTT2215060.408752310633598No Hit
GTAAATTATGGAATTAATTGAAATTTTATGTTGAGCTTGAACGCTTTCTT1827540.33724196986778043No Hit
GCTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTT1295190.23900567262716577No Hit
CTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTATAA1292970.2385960087220767No Hit
CTTTCATCTTTCCCTTGCGGTACTAGTTCTATAGCTCCTAGATGTACGAA1290010.23804979018195796No Hit
CTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTT1287260.23754232363286115No Hit
ATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTATTTGTAA1257900.23212442622141294No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1238930.2286238296990978No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1179670.21768838689928788No Hit
GCTACCTTTGCACGGTCAGGATACCGCGGCCGTTAAACTTTAGTCACTGG1177660.21731747498522072No Hit
CCCCAACCGAAATTTCAAACTTATACTATAGTTTTTGGGCCATTAGGTTT1066460.19679737307265127No Hit
GTCCTTTCGTACTGGGAGAAATCGTAAATAGATAGAAACCGACCTGGATT1060670.19572892532018926No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1042330.19234458477093994No Hit
CCGAGTTGTTATACGCGTATGCCTGGAGAATTGGAATTCTTGTTACTCAT963910.17787348412360454No Hit
GTGTAAATTATGGAATTAATTGAAATTTTATGTTGAGCTTGAACGCTTTC958870.176943436339078No Hit
CCTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGAACAAGTGATTATG958180.17681610836857733No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT952840.17583070059687664No Hit
CGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTA920460.16985551264787482No Hit
GCCACATAGACGAGTTGATTCATAAAATTGTTTTTAGGTAGCTCGTTTGG902990.16663171606143068No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT890590.1643435032582305No Hit
CTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGAACAAGTGATTATGC873220.1611381600008444No Hit
CTCTATTTCTCTTGTCCTTTCGTACTGGGAGAAATCGTAAATAGATAGAA859990.15869678456646227No Hit
GCTTGTTCTTACTTTTAATTAGTCTTTCATCTTTCCCTTGCGGTACTAGT841080.155207260041582No Hit
CTATAATCTAAACTTACTTTTTGATTTTGTTGTTTTTTTAGCAAGTTTAA828430.15287291391573662No Hit
GTTCATTATGCAAAAGGTACAAGGTTTAATCTTTGCTTGTTCTTACTTTT803850.148337085633264No Hit
CTTTAATCGTTGAACAAACGAACCATTAATAGCTTCTACACCATTGGGAT771810.14242463900305963No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA766620.141466911224946No Hit
GTGTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGC734520.1355433925973068No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT733790.13540868329518294No Hit
CGTTGATCAAAATATATCTGGGTCAATAAGATATGTTGATTTTACTTTGA714320.13181582012757745No Hit
GGCTGCTTTTAGGCCTACAATGGTTAAAAGCTGTTTTGTTAATTATTCAC711700.13133234290625612No Hit
GTGCCAGTTACCTTGTTTTTTTTTGGTCTTTTTGTTATTTTGTCTTTTTT675160.1245894964684388No Hit
GGTGTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAG654020.12068846270556362No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG619070.11423902419976954No Hit
CCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC618330.11410246956473985No Hit
GTCCTGATCCAACATCGAGGTCGTAAACCCTAATTGTCGATATGAACTCT615790.11363375500666496No Hit
CGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTTCTAGTTAGTTCA614960.11348059237548302No Hit
CTTACTTTTAATTAGTCTTTCATCTTTCCCTTGCGGTACTAGTTCTATAG612550.11303586714518363No Hit
GTAGGACTTTAATCGTTGAACAAACGAACCATTAATAGCTTCTACACCAT607810.1121611793478313No Hit
CTGGCAAATAGTTTTGTTAAATTTAATTATTTAGGTTTATGGCTAAGCAT607270.11206153137091775No Hit
GTCGATATGAACTCTTAAATAGGATTGCGCTGTTATCCCTAGGGTAACTT600680.11084545698599119No Hit
AGCTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTT596930.11015345714631372No Hit
GTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTTCTA588350.10857016151313165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)