FastQCFastQC Report
Fri 7 Jul 2023
SRR7124022_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7124022_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46673576
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length35-75
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGC2121650.4545719830852472No Hit
GTTAAACTTTAGTCACTGGGCAGGCAGTGCCTCTAATACTTGTAATGCTA2093420.44852359287833443No Hit
GTGATTATTGCCTATAGTCTGATTAACTAACAATGGTTATCCGAGTTGTT1961550.42026991889372267No Hit
GTAAATTATGGAATTAATTGAAATTTTATGTTGAGCTTGAACGCTTTCTT1648790.35325984021451456No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC1206470.25849101427325816No Hit
GCTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTT1178090.2524104859674776No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1159630.24845535726681836No Hit
ATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTATTTGTAA1152540.24693629646033552No Hit
CTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTT1146410.24562291948660628No Hit
GCTACCTTTGCACGGTCAGGATACCGCGGCCGTTAAACTTTAGTCACTGG1113480.2385675355151703No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1101150.23592578378824028No Hit
CTGGAGAATTGGAATTCTTGTTACTCATACTAACAGTGTTGCATCTATAA1075850.23050515777921107No Hit
CTTTCATCTTTCCCTTGCGGTACTAGTTCTATAGCTCCTAGATGTACGAA1074750.23026947838751416No Hit
GTCCTTTCGTACTGGGAGAAATCGTAAATAGATAGAAACCGACCTGGATT948070.20312778262372697No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT936120.20056744741392857No Hit
CCCCAACCGAAATTTCAAACTTATACTATAGTTTTTGGGCCATTAGGTTT921270.1973857756260202No Hit
CCTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGAACAAGTGATTATG873830.18722156622410932No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT849420.1819916262683622No Hit
CCGAGTTGTTATACGCGTATGCCTGGAGAATTGGAATTCTTGTTACTCAT846010.18126102015410175No Hit
CGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGCGCTTA832250.17831288521796573No Hit
CTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGAACAAGTGATTATGC822390.1762003408523915No Hit
GTGTAAATTATGGAATTAATTGAAATTTTATGTTGAGCTTGAACGCTTTC806210.17273371125452225No Hit
GCCACATAGACGAGTTGATTCATAAAATTGTTTTTAGGTAGCTCGTTTGG804410.1723480540681091No Hit
GCTTGTTCTTACTTTTAATTAGTCTTTCATCTTTCCCTTGCGGTACTAGT743510.15929998592779776No Hit
CTCTATTTCTCTTGTCCTTTCGTACTGGGAGAAATCGTAAATAGATAGAA733620.15718101394245002No Hit
CTTTAATCGTTGAACAAACGAACCATTAATAGCTTCTACACCATTGGGAT704160.15086909132482157No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA700870.15016419568965533No Hit
CTATAATCTAAACTTACTTTTTGATTTTGTTGTTTTTTTAGCAAGTTTAA698360.14962641816860142No Hit
GTTCATTATGCAAAAGGTACAAGGTTTAATCTTTGCTTGTTCTTACTTTT697510.14944430227501745No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT668010.14312380949769093No Hit
CGTTGATCAAAATATATCTGGGTCAATAAGATATGTTGATTTTACTTTGA647690.13877016837107148No Hit
GGCTGCTTTTAGGCCTACAATGGTTAAAAGCTGTTTTGTTAATTATTCAC641770.1375017847357571No Hit
GTGTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAGC631340.13526711559448543No Hit
CCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC621480.1331545712289112No Hit
GGTGTACGTATATATTTTATTTAGATTTTATTCATAAATTAAGTTGAGAG593110.12707618546305516No Hit
GTGCCAGTTACCTTGTTTTTTTTTGGTCTTTTTGTTATTTTGTCTTTTTT580310.1243337343596728No Hit
GTCCTGATCCAACATCGAGGTCGTAAACCCTAATTGTCGATATGAACTCT560430.12007436498973209No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG559940.11996938053343074No Hit
CGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTTCTAGTTAGTTCA559920.1199650954535817No Hit
GTCGATATGAACTCTTAAATAGGATTGCGCTGTTATCCCTAGGGTAACTT558630.11968870780331894No Hit
GTAGGACTTTAATCGTTGAACAAACGAACCATTAATAGCTTCTACACCAT543100.11636134330054333No Hit
GTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTTTTCTA531360.11384600142915982No Hit
CTGGCAAATAGTTTTGTTAAATTTAATTATTTAGGTTTATGGCTAAGCAT526050.11270831272924106No Hit
CTTACTTTTAATTAGTCTTTCATCTTTCCCTTGCGGTACTAGTTCTATAG508470.10894172754193936No Hit
GCGCTTATTTGTAAGGTGGCTCTATTTCTCTTGTCCTTTCGTACTGGGAG508210.1088860215039019No Hit
AGCTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTAGAAGTT506330.10848322399809261No Hit
GGGCCATTAGGTTTAATAAATTAAATAGATAAGTTATATAATTTAAGCTC492800.10558436748022051No Hit
CTCGTCTTATTATTATATTTCAGCCTCTTCACTGAAAGGTCAATTTCACT475100.1017920718138246No Hit
GTTTTTGGTAAACAGGCGGGGTTCTTGTTTGCCGAGTTCCTTTTATCTTT474810.10172993815601358No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG470610.10083007138771627No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG469430.10057725167662318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)