FastQCFastQC Report
Fri 7 Jul 2023
SRR7182551_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7182551_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34399623
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAAA7104252.0652115867665177No Hit
TATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA3582801.041523042272876No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGCAAAAAAAAAA2482140.721560233378139No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGAAAAAAAAAAAAAAAAAAA2090170.6076142171674381No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCAAAAAAAAAAAAAAAAAAAA1790590.5205260534395972No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCAAAAAAAAAAAAAAAAAA1456710.42346685020356184No Hit
TATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGCAAAAAAAAA1441780.4191266863593244No Hit
TCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAA1120500.32573031396303387No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGATAAAAAAAAAA1016550.2955119595351379No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGAAAAAAAAAAA951540.27661349660721574No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA949110.2759070935166935No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTAAAAAAAAA838670.2438020905054686No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA836080.24304917527729883No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAAAAAAAAAAAAAAAAAAAA773270.22479025424203047No Hit
TCGGGACCGGGGTCCGGTGCGGAGTGCCCTTCGAAAAAAAAAAAAAAAAA696860.20257780150672No Hit
ACATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAA673550.19580156445319183No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAA646460.18792647814774016No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA631430.18355724421747296No Hit
TCGGGACCGGGGTCCGGTGCGGAGTGCCCTTCAAAAAAAAAAAAAAAAAA610580.17749613128027594No Hit
TATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGATAAAAAAAAA590490.1716559509969048No Hit
TTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAAAA563980.16394947119042555No Hit
TATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGAAAAAAAAAA557410.16203956653827284No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAAAAAAAAAAA518070.15060339469418021No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTGAAAAAAAAA505120.14683881855333125No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGAAAAAAAAAAAAAAAAAAAAGA475630.13826605018316626No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCTAAAAAAAAAAAAAAAAAAA468450.13617881800623222No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA467900.13601893253306874No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGTAAAAAAAAAAAAAAAAAA455080.1322921475040584No Hit
TCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGCAAAAAAAA449600.13069910678962965No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGAAAAAAAAAAAAA440310.12799849579746847No Hit
TATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTAAAAAAAA436410.12686476244230932No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCCAAAAAAAAAAAAAAAAAAA435440.12658278260782102No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGTGAAAAAAAAAAAAAAAAAAA417960.12150133156982564No Hit
TTTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAAA416930.1212019096837195No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCAAAAAAAAAAAAAAAAAAAAGAT416710.12113795549445411No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAAAAA414130.1203879472748873No Hit
TCGTCGCGCGCGCGTCCGCTGGGGGCGGGGAGCGGTAAAAAAAAAAAAAA394890.1147948627227688No Hit
TCGGGACCGGGGTCCGGTGCGGAGTGCCCTTCGTAAAAAAAAAAAAAAAA393850.11449253382805968No Hit
TTCCCTGGTGGTCTAGTGGTTAGGATTCGGCAAAAAAAAAAAAAAAAAAA390060.11339077756753323No Hit
TCCCTGGTGGTCTAGTGGCTAGGATTCGGCGAAAAAAAAAAAAAAAAAAA383080.11136168556265863No Hit
TTCCCTGGTGGTCTAGTGGTTAGGATTCGGCGAAAAAAAAAAAAAAAAAA378670.1100796947687479No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCAAAAAAAAAAAAAA376220.10936747766101972No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGACAAAAAAAAAAAAAAAAAAAA367670.10688198530547849No Hit
ATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAAAAAAAAAA362700.10543720202980131No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCAAAAAAAAAAAAAAAAAAAG361500.10508836099744465No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGCAAAAAAAAA358460.1042046303821411No Hit
TCCCTGGTGGTCTAGTGGCTAGGATTCGGCAAAAAAAAAAAAAAAAAAAA347860.1011232012629906No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)